Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01165 ATGAAATCCAATCAAAACAAAGCAAAATACCATATTAACCAAACACAAAAGTACAACACAAACCTTTCCATGATCCGAAACATAAGCCGGTCGGGTCGCCGGATACTAACTTTTCCGGCGGTTCATCCATGCGAAAGCATCGCTCCCTCTACTCTTCTCCCTTCACTCATCACTCTCTGCAAAGCTATCTCCTCTTTCCAGCACAGGTTATCGTGTTTTCCTTGCAACAAGCTAAACGCGAGAAACGCTATTCGTTTGACCCATCTTCTCCAACCTTTCCTTCGTGAAATCCGAGACTGTCATTCGGGTCTTCCTGATCCTGCAACTCTGAGCCTCTCCGAGCTCCATTTAACCTTCCAGAAGCTTATTTTCCTTCTTGAAGATCTCTCCCGCGAAGGTGCCAAGCTTTACATGTTGATGGAATCGGATCGGGTTGCCACTCAATTTCGGGTCATATCAAGATCCATGGCCACTGCTTTAGACGTTTTCCCTTTCGGTTCTGTGGAGATCTCTGAGGAAACCAAAGAGCACGCTTTGCTGCTGAACGTACAAGCCAGGAAGGGCAGGTTTGAATTTGAGGAAGAAGATAAACGGGTTGTGATGAGTGTTGTGTCGGGTTTGACCCGGTTCGAGAACCAGGTTGCTCCGGATGAGGGTGATCTGAGGTGGGTCATTGAGTATATTGGGGTTAAAGGGTGGAATGAGTGTAACAAAGAGGTGAAGTTTTTGGAGGGAGAAATTGGGTTTAAGGGCTCCGATGAGAAAAGGAACAAGGTGACACTTTTGAGTAGTTTGGTGGGGTTCATGAGTTATTGTAGATGCCTTGTGATGGAGGCTGTTGACTGTGAAGAGAGTAACAAAAAAATTGAGGGAACGAGAGAAAGTAGTATTGAAAGTGAGATTGATCTGAGTTTGAGTTGTCTTAACCCGGATGATTTTCGATGTCCAATCTCTTTGGAACTGATGAGTGATCCAGTGACAATAGAGACAGGTCATACGTATGATCGTTCTTCAATTCTGAAGTGGTTCAGAAGTGGAAACTTGACGTGTCCTAACACAGCTAAAAGGCTTATCACCACTGAAATGGTTCCAAACTTAGTGCTTCGGAAGTTGATTCAGCAGTATTGCTATGCAAATGACATAAGCATTCCCTTTGTTGATTTGGGTCGTAGGAATCGTGAGGGTACTAGGAGAGTGGAGCCTGAGAGTGTAGCAGCAGAGGGAGCAATGAGAATGTTGGCTAGTTTTCTGAAAGGCAAGATTGAGAATGGAAGTGGGGAAGAGATGAATAGAGGTGCATTTGAAATAAGGCTTATTTCCAAAACAAGCGTTTTCAATAGGTCTTGTTTGGTGGAAGCTGGTTTGGTTCCTCTTTTGTTGAGGTTGTTGTCATCGATGGATTCGTTGACTCAAGAGAATGCTGCAGCAGCCCTTCTAAACCTCTCAAAATGTGCAAAGAGTAGAAGTGTGATGGTTGAGAAATGGGGGTTGGAATTAATTGTTGGGGTTTTAAAGAAGGGTGTGAAGATGGAAGCTCGCCAGCATGCTGCTGCTGTGTTGTTTTACCTTAGTGCTGAGTATGGGAACCTGATAGGGAAGGAGGCAGAAGCAATTCCAGCATTGATAAGGCTTGTCAAAGATGGCTCTTATCGAAGCAAGAAAAATGGGTTGGTTGCAATATTTGGTCTTCTTAAGCACCATGAAAATCATAAGAGGGTGGTGGAAGGTGGAGCAGTTCCTTTGCTAGTTGGTATCTTGAAAGGATCTGAAAATGAAGACCTAATCACAGATTCTCTGGCAGTTCTGGCAAGTCTAGCAGAGAAGAGTGAGGGAATGTTAGCAATTATTGAGGAAGAGGGATTGCATGTAGCTGTTGAAATTTTGAGTTGTTCATCTTCGAGGGTGGGAAGGGAGCACTGTGTGGCCTTGTTGCTTTCTTTGTCTCTAAATGGTGGAGAGGAAGTGGTTGGTTATTTAGTGAAGAGTCCTTCTCTTATGGGATCATTGTATTCCCAAATAAGTGAAGGCACATCTCGAGCAAGGAAGAAAGCAAGTGCTCTCATTAGGGTCCTCCATGATTTTTATGAAAGGAGGTCCTCTGGCTTTAAGATTTCAGTAATTCCGCAAGAACAGTTCATTCATGTTCGGTAA 2151 0.4407 MKSNQNKAKYHINQTQKYNTNLSMIRNISRSGRRILTFPAVHPCESIAPSTLLPSLITLCKAISSFQHRLSCFPCNKLNARNAIRLTHLLQPFLREIRDCHSGLPDPATLSLSELHLTFQKLIFLLEDLSREGAKLYMLMESDRVATQFRVISRSMATALDVFPFGSVEISEETKEHALLLNVQARKGRFEFEEEDKRVVMSVVSGLTRFENQVAPDEGDLRWVIEYIGVKGWNECNKEVKFLEGEIGFKGSDEKRNKVTLLSSLVGFMSYCRCLVMEAVDCEESNKKIEGTRESSIESEIDLSLSCLNPDDFRCPISLELMSDPVTIETGHTYDRSSILKWFRSGNLTCPNTAKRLITTEMVPNLVLRKLIQQYCYANDISIPFVDLGRRNREGTRRVEPESVAAEGAMRMLASFLKGKIENGSGEEMNRGAFEIRLISKTSVFNRSCLVEAGLVPLLLRLLSSMDSLTQENAAAALLNLSKCAKSRSVMVEKWGLELIVGVLKKGVKMEARQHAAAVLFYLSAEYGNLIGKEAEAIPALIRLVKDGSYRSKKNGLVAIFGLLKHHENHKRVVEGGAVPLLVGILKGSENEDLITDSLAVLASLAEKSEGMLAIIEEEGLHVAVEILSCSSSRVGREHCVALLLSLSLNGGEEVVGYLVKSPSLMGSLYSQISEGTSRARKKASALIRVLHDFYERRSSGFKISVIPQEQFIHVR 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01165 716 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 577 620 IPR000225 GO:0005515
Vian10g01165 716 PANTHER U BOX DOMAIN-CONTAINING 80 691 - -
Vian10g01165 716 FunFam RING-type E3 ubiquitin transferase 391 702 - -
Vian10g01165 716 SMART Ubox_2 312 375 IPR003613 GO:0004842|GO:0016567
Vian10g01165 716 SMART arm_5 566 607 IPR000225 GO:0005515
Vian10g01165 716 SMART arm_5 484 525 IPR000225 GO:0005515
Vian10g01165 716 SMART arm_5 443 483 IPR000225 GO:0005515
Vian10g01165 716 SUPERFAMILY RING/U-box 310 381 - -
Vian10g01165 716 Pfam U-box domain 310 379 IPR003613 GO:0004842|GO:0016567
Vian10g01165 716 ProSiteProfiles U-box domain profile. 308 382 IPR003613 GO:0004842|GO:0016567
Vian10g01165 716 CDD RING-Ubox_PUB 310 362 IPR045210 -
Vian10g01165 716 Gene3D - 387 698 IPR011989 -
Vian10g01165 716 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 454 496 IPR000225 GO:0005515
Vian10g01165 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 309 383 IPR013083 -
Vian10g01165 716 Pfam Armadillo/beta-catenin-like repeat 446 482 IPR000225 GO:0005515
Vian10g01165 716 SUPERFAMILY ARM repeat 406 691 IPR016024 -
Vian10g01165 716 FunFam RING-type E3 ubiquitin transferase 309 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01165 Vian-Chr10 19140511 19142661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01165 24 714 U-box Gene Family AT1G60190 44.618 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01165 - - vra:106779024 1290.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01165 10 19140511 19142661 Vian10g01165 10 19140511 19142661 ECH