Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01123 ATGGAAAAGGATATCTGTGATCTTTCTCAAACATGGGATGGTGATAATGGAAACGCAACTGAGAAAAGGCTCAGGTTATTTGGCTTTGAGCTAAACCCTTCTAAAGAAAGCTGTGTCAAAGAGTCTGGTGAAGGAGATGAAAGTGTAAACTCCTCTAACTCAGTCTCATCAGGAGGAGACAAAACCGTGCAAGAAAAAACCTCTGCCAAAGACCCAGATGAGAAGAAGTTCGAGTGCCAGTACTGTTTCAAAGAATTTGCAAATTCACAAGCATTAGGAGGGCACCAAAATGCCCACAAGAAAGAGAGAATGAAGAAGAAGAGGTTGCAACTTCAATCCATAAACCGTTACCTCCAACACCCTTTTCAAACCAGCAATGGATTTGCTTACCAAACCTCAGATAGTCCTTGGTTCTATGACCCCTCTACCTATAATTCTGAGTTCACTCTTTGTGAAGAACCTCAGATTAGCTTCAAATCAAATGTTATGGATACCAACTTTTCTTGTGATCAGAAATCTAGTTGGTATTCTGTGGCATCGCACCCCCCTTCACAACAAGATACTTGCATGTTTACTTTCTCCAATGCAAATAATAACTCTCCTTTCATCTATAAACCTTGCCACTTCCCTTCTTCAAACCAGAGTCATAGTAATGCCCTAGATCTTCAACTAGGCCTCAACTTGGAGTCAAATACAACAACTTCTCTAAGGAGGATGTAA 720 0.4069 MEKDICDLSQTWDGDNGNATEKRLRLFGFELNPSKESCVKESGEGDESVNSSNSVSSGGDKTVQEKTSAKDPDEKKFECQYCFKEFANSQALGGHQNAHKKERMKKKRLQLQSINRYLQHPFQTSNGFAYQTSDSPWFYDPSTYNSEFTLCEEPQISFKSNVMDTNFSCDQKSSWYSVASHPPSQQDTCMFTFSNANNNSPFIYKPCHFPSSNQSHSNALDLQLGLNLESNTTTSLRRM 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01123 239 SUPERFAMILY beta-beta-alpha zinc fingers 73 104 IPR036236 -
Vian10g01123 239 FunFam zinc finger protein 5 51 127 - -
Vian10g01123 239 Gene3D Classic Zinc Finger 50 128 - -
Vian10g01123 239 PANTHER ZINC FINGER PROTEIN 5 18 229 IPR044299 GO:0010090
Vian10g01123 239 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Vian10g01123 239 MobiDBLite consensus disorder prediction 44 63 - -
Vian10g01123 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 104 IPR013087 -
Vian10g01123 239 MobiDBLite consensus disorder prediction 37 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01123 Vian-Chr10 17758211 17758930 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01123 10 113 C2H2 Transcription Factor Family AT5G06650 40.187 4.66e-16 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian10g01123 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01123 - - gmx:100527006 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01123 10 17758211 17758930 Vian10g01123 10 17758211 17758930 ECH