Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01117 ATGGATGAGTCGAAGAAAGTGGCTAACCCAGAGCTAGAGAAGCCCAAAGAAGAGGGAGAAGAAGAGGATCCCAAGCCCAAACCCAAAAATCCCCTTGATCTTCTTCCTCCAAGCAAGATTTTATTGGATGAGTGGAAAAGACTATACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGGATTTTGGGACATGTATGATCCAGAGGGTTATTCTCTCTGGTTCTGTGATTACAAATACAACGACGAAAACATTGTTTCCTTTGTGACATTAAACAAGGTTGGTGGTTTTCTTCAGCAGATGGATCTGGCTCGCAAGTATGCTTTTGGAAACATGCTTGTAATTGGATCACAAACACCATTTAAGGTGAAAGGGTTGTGGCTTTTGCGTGGGCAAGAGATTCCACAATTTGTGATTGACGAGTGTTATGATATGGAGCTGTACGAATGGACCAAGGTTGACATCTATGACAAAACTCAAAAAGAGCGGGTGAATCGGATAATTGAGGATTATGAAGCATTTGAGGGAGAGCCTCTTCCAGATGCTACGTGCTTCAACTGA 567 0.4286 MDESKKVANPELEKPKEEGEEEDPKPKPKNPLDLLPPSKILLDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENIVSFVTLNKVGGFLQQMDLARKYAFGNMLVIGSQTPFKVKGLWLLRGQEIPQFVIDECYDMELYEWTKVDIYDKTQKERVNRIIEDYEAFEGEPLPDATCFN 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01117 188 FunFam Elongation factor 1-gamma 1 28 188 - -
Vian10g01117 188 SUPERFAMILY eEF1-gamma domain 28 187 IPR036433 GO:0003746|GO:0006414
Vian10g01117 188 SMART EF1G_2 27 135 IPR001662 GO:0003746|GO:0006414
Vian10g01117 188 MobiDBLite consensus disorder prediction 1 29 - -
Vian10g01117 188 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 28 188 IPR001662 GO:0003746|GO:0006414
Vian10g01117 188 Pfam Elongation factor 1 gamma, conserved domain 27 135 IPR001662 GO:0003746|GO:0006414
Vian10g01117 188 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 2 188 IPR044628 GO:0004364
Vian10g01117 188 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 28 188 IPR036433 GO:0003746|GO:0006414
Vian10g01117 188 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01117 Vian-Chr10 14593705 14594454 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01117 10 187 Eukaryotic Initiation Factors Gene Family AT1G57720 72.396 6.13e-95 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01117 K03233 - gmx:100795680 310.842