Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01112 ATGTCAGAGTTTCTCTTGGGGTTTGTCGTTTTGTGGCTTGAGGTCTTGGTGGAAAAGGTTGGAAAGGGTGCTGCGGACGCAGACGTCACAGGATTTGTGCTGGGGTTCGAAGGAGGTAGAGAAAGGTTCGTTGATAATGACCCTGAGTTTCACTCCCAACCTGACAAGTCCAAAACTGTGATTGAGAATGATGCAGTGTTTTCTAGTCCAGCTTTGGAATCAAAAACTAAAATCCTTGGCAGTAGTAGTTCACTACAGCAGAATGCAAATATGGAGCATAAGTTAGATCATTTAGGTCATGGAAGTAATCAAGTTAGTGACTGTAATTGTGGTCAAACTCAAGATGCAGATGTCTTGACTGCAATTGGGAACTTATGCATATGTTCAATTACCGTGGGGATGTTTATTGAGATTATTGTTATGTATCCCATCCAAGATCGACAATATCGCCCTGGAATTGATAACCTTCTTGTGCTTCTCATTGGTGGAATCCCAATTGCACTGCCCACAGTTCTCTCAGTGACTATGGCCATTGGTTCTCATAGGCTATCGCAGCAGATTTACAGGTCATTTTCAACCATATCCTTTCTAAGAGATCAGCTAGCCATAGGAAAGGAAACTGGCCGGCGCTTGGGAATGGATGGGTTTCCTGGTGTTTTTCTTGCTGTGTTTCTATCTTCATCTTTGCCATTGGTTGTTTTTAATACTATTGAGCACAAGTACGAGATTGTGAAACGTTTGCAAGCCAGGAAACATATTTATGGAATGACTGGTGATGAAGTGAATGACGCACCTGCACTCAAGAAGGCCGACATTGGTATAGCTGTTGCTGACGCAACTGATGCAGCTCGGAGTGCATCCGATATTGTTTTAATAGAACCTGGCCTTAGTGTTATTATTAGTGCAGTGTTGACAAGTCCAATAATTTTATGTTTAATGCAGTAA 945 0.4222 MSEFLLGFVVLWLEVLVEKVGKGAADADVTGFVLGFEGGRERFVDNDPEFHSQPDKSKTVIENDAVFSSPALESKTKILGSSSSLQQNANMEHKLDHLGHGSNQVSDCNCGQTQDADVLTAIGNLCICSITVGMFIEIIVMYPIQDRQYRPGIDNLLVLLIGGIPIALPTVLSVTMAIGSHRLSQQIYRSFSTISFLRDQLAIGKETGRRLGMDGFPGVFLAVFLSSSLPLVVFNTIEHKYEIVKRLQARKHIYGMTGDEVNDAPALKKADIGIAVADATDAARSASDIVLIEPGLSVIISAVLTSPIILCLMQ 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01112 314 Gene3D - 199 294 IPR023214 -
Vian10g01112 314 PRINTS P-type cation-transporting ATPase superfamily signature 280 292 - -
Vian10g01112 314 PRINTS P-type cation-transporting ATPase superfamily signature 257 276 - -
Vian10g01112 314 FunFam Plasma membrane ATPase 231 305 - -
Vian10g01112 314 PANTHER CALCIUM-TRANSPORTING ATPASE 111 186 - -
Vian10g01112 314 PRINTS H+-transporting ATPase (proton pump) signature 257 273 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian10g01112 314 PRINTS H+-transporting ATPase (proton pump) signature 288 313 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian10g01112 314 PRINTS H+-transporting ATPase (proton pump) signature 229 245 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian10g01112 314 SUPERFAMILY Calcium ATPase, transmembrane domain M 118 186 IPR023298 -
Vian10g01112 314 SUPERFAMILY HAD-like 229 303 IPR036412 -
Vian10g01112 314 Gene3D - 112 186 - -
Vian10g01112 314 Gene3D - 295 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01112 Vian-Chr10 13530511 13532886 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01112 199 314 Primary Pumps ATPases AT3G47950 61.224 5.13e-40 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01112 K01535 - var:108336584 145.591