Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01111 ATGGCTATTGAAAACCATGACACCACTGTCAGAGAAATCAAGCCCAAGAACCGGAGAATCATGGGTGCTGGAGGTCCCGATGATGAGGACAATAGATGGCCACCATGGTTGAAGCCACTGCTCAAAGAGAGCTTCTTTGTTCAATGCAAGTTACATGCTGATTCTCACAAGAGTGAATGCAACATGTATTGCTTGGACTGTATGAACGGCCCTCTCTGCTCTCTCTGCCTCGCCCACCACAAGGATCACCGTGCAATCCAGATTAGGAGGTCCTCATACCATGATGTGATCAGGGTTTCTGAGATTCAGAAGGTGTTGGACATCACTGGTGTCCAAACCTACATTATCAACAGCGCAAGGGTGGTGTTTTTGAACGAGAGGCCTCAGCCAAGGCCAGGAAAAGGGGTCACAAACACATGTGAAGTCTGCGAGCGAAGCCTTCTTGATTCTTACCGCTTCTGTTCTCTTGGTTGCAAGATTGTTGGGACATCTAAGAACCCACAGAAGAAGAAGAAGCAGTCAACGGCAATGACATCAGATTCTGAGGATTCATACAGTAGCAACAGCGTCCATGGCCTGCAGAAAAACTGCAAAGTTCAGAGCTTCACACCGTCCACTCCACCTCCAACTTCGGTTAATTACAGAACTGCCAAGAGAAGAAAGGGAATACCGCACCGAGCCCCAATGGGGGGACTAATCATAGAGTATTAG 711 0.481 MAIENHDTTVREIKPKNRRIMGAGGPDDEDNRWPPWLKPLLKESFFVQCKLHADSHKSECNMYCLDCMNGPLCSLCLAHHKDHRAIQIRRSSYHDVIRVSEIQKVLDITGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERSLLDSYRFCSLGCKIVGTSKNPQKKKKQSTAMTSDSEDSYSSNSVHGLQKNCKVQSFTPSTPPPTSVNYRTAKRRKGIPHRAPMGGLIIEY 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01111 236 Pfam PLATZ transcription factor 89 160 IPR006734 -
Vian10g01111 236 MobiDBLite consensus disorder prediction 167 213 - -
Vian10g01111 236 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 27 229 - -
Vian10g01111 236 MobiDBLite consensus disorder prediction 164 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01111 Vian-Chr10 13421837 13423517 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vian10g01111 PLATZ 7.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01111 - - gmx:100797900 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01111 10 13421837 13423517 Vian10g01111 10 13421837 13423517 ECH
Vian10g01111 10 13421837 13423517 Vian1g02075 1 25074788 25081124 PCT