Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01109 ATGGCTACTTTAGAATCTGCCCTCACCTTGTTCGCACCTCAACGATTTTCGGATAATTATCGTTCGTCTGCAAAACCACCTCACTCCATTAAACTTCATACTTCCACTTCCCTTTTCTTCTCTTCCAAGGCCTCTTTCAAATCTGCAAGACTCTGCTTCCAGCTATGCTCTGCTCTGCAAGAGCTACCCACAACAGAGAAAACACCTGACTCAACCCAACCAACGGACAATCTCACCAAGCTCTACGTAGCTAACTTGCCTTGGACTCTGTCGCCGGCCGACATCAAGAACCTTTTTGCCCAATGCGGACCTGTAACTGACGTCGAGATAATAAGGAACAAAAAAGGGAGGCACATGGGATATGCCTTCGTTACTATGGATTCCGGGGAAGAGGCTCAGGCTGCCCTTGATAAATTTGATACATATGAATTATCAGGACGGATAATAAGGGTAGAGTTTGCAAAGCAATTGAATAAACCTCCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCACCACCTCCTTCAGGTCGTCGCAATCCTAGAGAGACACGACATGTACTTTATGTATCCAACCTTACATGGAAAGCAAGATCTACCCATCTCAGGCAAATCTTCACTGAAAATTTCAAAACACCAGTTTCAGCCAGGGTTGTCTTTGACAGCCCTTCTAAACGATCAGCTGGGTACGGATTTGTTTCTTTTCTTACTAAGGAGGATGCAGAGGCTGCCATTTCTGCTGTAGACGGGAAGTGGGTTGTTGCCCAAATCGCTTTCTCCATAGTTCCATCTTTGGATCCTTACATCCAGGAGTTAATGGGACGACCCCTTCGCCTAACATTCAGTGAAAAGAAGGATAAGGAAGCTGGAGGTGGAAAAGAGGAAGACCAAATTAAAGATGCTGGAATTGAAGATGAAGACCAAAGTTCTGATGCTCAACCAGAAGAGTCATAA 966 0.4534 MATLESALTLFAPQRFSDNYRSSAKPPHSIKLHTSTSLFFSSKASFKSARLCFQLCSALQELPTTEKTPDSTQPTDNLTKLYVANLPWTLSPADIKNLFAQCGPVTDVEIIRNKKGRHMGYAFVTMDSGEEAQAALDKFDTYELSGRIIRVEFAKQLNKPPPSPSPSPSPSPSPSPPPPSGRRNPRETRHVLYVSNLTWKARSTHLRQIFTENFKTPVSARVVFDSPSKRSAGYGFVSFLTKEDAEAAISAVDGKWVVAQIAFSIVPSLDPYIQELMGRPLRLTFSEKKDKEAGGGKEEDQIKDAGIEDEDQSSDAQPEES 321
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01109 321 MobiDBLite consensus disorder prediction 156 186 - -
Vian10g01109 321 MobiDBLite consensus disorder prediction 284 321 - -
Vian10g01109 321 CDD RRM_SF 81 152 - -
Vian10g01109 321 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 149 IPR000504 GO:0003723
Vian10g01109 321 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 256 IPR000504 GO:0003723
Vian10g01109 321 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 156 IPR000504 GO:0003723
Vian10g01109 321 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 288 IPR000504 GO:0003723
Vian10g01109 321 Gene3D - 162 295 IPR012677 -
Vian10g01109 321 PANTHER OS02G0815200 PROTEIN 18 286 - -
Vian10g01109 321 SUPERFAMILY RNA-binding domain, RBD 78 257 IPR035979 GO:0003676
Vian10g01109 321 Gene3D - 54 161 IPR012677 -
Vian10g01109 321 MobiDBLite consensus disorder prediction 284 310 - -
Vian10g01109 321 MobiDBLite consensus disorder prediction 159 182 - -
Vian10g01109 321 SMART rrm1_1 191 262 IPR000504 GO:0003723
Vian10g01109 321 SMART rrm1_1 80 152 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vian10g01109 Vian-Chr10 13356055 13359326 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01109 62 263 Eukaryotic Initiation Factors Gene Family AT3G16380 26.108 3.90e-12 65.1
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01109 10 13356055 13359326 Vian10g01109 10 13356055 13359326 ECH