Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vian10g01109 | ATGGCTACTTTAGAATCTGCCCTCACCTTGTTCGCACCTCAACGATTTTCGGATAATTATCGTTCGTCTGCAAAACCACCTCACTCCATTAAACTTCATACTTCCACTTCCCTTTTCTTCTCTTCCAAGGCCTCTTTCAAATCTGCAAGACTCTGCTTCCAGCTATGCTCTGCTCTGCAAGAGCTACCCACAACAGAGAAAACACCTGACTCAACCCAACCAACGGACAATCTCACCAAGCTCTACGTAGCTAACTTGCCTTGGACTCTGTCGCCGGCCGACATCAAGAACCTTTTTGCCCAATGCGGACCTGTAACTGACGTCGAGATAATAAGGAACAAAAAAGGGAGGCACATGGGATATGCCTTCGTTACTATGGATTCCGGGGAAGAGGCTCAGGCTGCCCTTGATAAATTTGATACATATGAATTATCAGGACGGATAATAAGGGTAGAGTTTGCAAAGCAATTGAATAAACCTCCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCACCACCTCCTTCAGGTCGTCGCAATCCTAGAGAGACACGACATGTACTTTATGTATCCAACCTTACATGGAAAGCAAGATCTACCCATCTCAGGCAAATCTTCACTGAAAATTTCAAAACACCAGTTTCAGCCAGGGTTGTCTTTGACAGCCCTTCTAAACGATCAGCTGGGTACGGATTTGTTTCTTTTCTTACTAAGGAGGATGCAGAGGCTGCCATTTCTGCTGTAGACGGGAAGTGGGTTGTTGCCCAAATCGCTTTCTCCATAGTTCCATCTTTGGATCCTTACATCCAGGAGTTAATGGGACGACCCCTTCGCCTAACATTCAGTGAAAAGAAGGATAAGGAAGCTGGAGGTGGAAAAGAGGAAGACCAAATTAAAGATGCTGGAATTGAAGATGAAGACCAAAGTTCTGATGCTCAACCAGAAGAGTCATAA | 966 | 0.4534 | MATLESALTLFAPQRFSDNYRSSAKPPHSIKLHTSTSLFFSSKASFKSARLCFQLCSALQELPTTEKTPDSTQPTDNLTKLYVANLPWTLSPADIKNLFAQCGPVTDVEIIRNKKGRHMGYAFVTMDSGEEAQAALDKFDTYELSGRIIRVEFAKQLNKPPPSPSPSPSPSPSPSPPPPSGRRNPRETRHVLYVSNLTWKARSTHLRQIFTENFKTPVSARVVFDSPSKRSAGYGFVSFLTKEDAEAAISAVDGKWVVAQIAFSIVPSLDPYIQELMGRPLRLTFSEKKDKEAGGGKEEDQIKDAGIEDEDQSSDAQPEES | 321 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vian10g01109 | 321 | MobiDBLite | consensus disorder prediction | 156 | 186 | - | - | |
Vian10g01109 | 321 | MobiDBLite | consensus disorder prediction | 284 | 321 | - | - | |
Vian10g01109 | 321 | CDD | RRM_SF | 81 | 152 | - | - | |
Vian10g01109 | 321 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 81 | 149 | IPR000504 | GO:0003723 | |
Vian10g01109 | 321 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 192 | 256 | IPR000504 | GO:0003723 | |
Vian10g01109 | 321 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 79 | 156 | IPR000504 | GO:0003723 | |
Vian10g01109 | 321 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 190 | 288 | IPR000504 | GO:0003723 | |
Vian10g01109 | 321 | Gene3D | - | 162 | 295 | IPR012677 | - | |
Vian10g01109 | 321 | PANTHER | OS02G0815200 PROTEIN | 18 | 286 | - | - | |
Vian10g01109 | 321 | SUPERFAMILY | RNA-binding domain, RBD | 78 | 257 | IPR035979 | GO:0003676 | |
Vian10g01109 | 321 | Gene3D | - | 54 | 161 | IPR012677 | - | |
Vian10g01109 | 321 | MobiDBLite | consensus disorder prediction | 284 | 310 | - | - | |
Vian10g01109 | 321 | MobiDBLite | consensus disorder prediction | 159 | 182 | - | - | |
Vian10g01109 | 321 | SMART | rrm1_1 | 191 | 262 | IPR000504 | GO:0003723 | |
Vian10g01109 | 321 | SMART | rrm1_1 | 80 | 152 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vian10g01109 | Vian-Chr10 | 13356055 | 13359326 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vian10g01109 | 62 | 263 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 26.108 | 3.90e-12 | 65.1 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vian10g01109 | 10 | 13356055 | 13359326 | Vian10g01109 | 10 | 13356055 | 13359326 | ECH |