Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01108 ATGACTTCTCTTGGAAACACGAAAAGTTTGGTTCCATACATGAACAACAAAGACTGTTCTCAAGGGTTTTGCAGCTTGTATTGTCCACAGTGGTGTTATGTAATCTACCCTCCTCCTCCTCCCTTCGAATTTCCCGCTGATGATTCAAGTCCAAATTTCTCTCCTCTAGTAATCGCTGTCATTGGGGTCTTGGCCAGTGCTTTTCTTCTTGTGAGTTACTATACCTTAATATCCAAGTACTGTGGCAGCAGAGAATCTTCACAAAGCGAAGATCACGAAGAAAACGTTGAATTGGAAGATGATCACAACCCTTCGCTCCACGAGCCTTGGCATGCTCCAACCATTGGGTTAGACGAGGCTCTGATAAAGTCCATAACAGTTTGCAAGTACAAGAAAGGCAATGGGTTGGTTGAGGTGACAGATTGCCCTGTTTGTCTCAGCGAGTTTGAAGACGATGAAAGTGTTAGACTCTTGCCTAAATGCAGCCATGCTTTTCATCTCCCTTGCATTGACATGTGGCTCAAATCTCACTCCAGTTGCCCTCTATGTCGTGCTAGCATATTCACCTTCAATGCTGCAGCAATTCATGTGGCTACCCCAGTCATAGAATTGGTCAGTGGAACTTCAGAAAACCAACATGCAGATGAACATGTTGCTGTTACTACAAGGGACAGTGATCTGGATGCAGTGTCTCACACGGTGAAGCGGTTCCGAAGACTGCATTGCGTGCTTTGA 735 0.4517 MTSLGNTKSLVPYMNNKDCSQGFCSLYCPQWCYVIYPPPPPFEFPADDSSPNFSPLVIAVIGVLASAFLLVSYYTLISKYCGSRESSQSEDHEENVELEDDHNPSLHEPWHAPTIGLDEALIKSITVCKYKKGNGLVEVTDCPVCLSEFEDDESVRLLPKCSHAFHLPCIDMWLKSHSSCPLCRASIFTFNAAAIHVATPVIELVSGTSENQHADEHVAVTTRDSDLDAVSHTVKRFRRLHCVL 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01108 244 SMART ring_2 142 183 IPR001841 -
Vian10g01108 244 SUPERFAMILY RING/U-box 141 190 - -
Vian10g01108 244 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Vian10g01108 244 PANTHER RING-H2 FINGER PROTEIN ATL16 41 216 IPR044600 GO:0016567|GO:0016740
Vian10g01108 244 Pfam Ring finger domain 141 184 IPR001841 -
Vian10g01108 244 CDD RING-H2_EL5-like 141 184 - -
Vian10g01108 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 191 IPR013083 -
Vian10g01108 244 FunFam RING-H2 finger protein ATL54 117 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01108 Vian-Chr10 13341875 13342609 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01108 1 224 C3H Transcription Factor Family AT3G03550 48.548 8.53e-65 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01108 - - gmx:100792267 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01108 10 13341875 13342609 Vian10g01108 10 13341875 13342609 ECH
Vian10g01108 10 13341875 13342609 Vian1g02071 1 25012460 25013518 PCT