Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01106 ATGGCTCCTTCTTTCGACACAAACACTCAAACAGTTTGCGTCATGGACGCTTCCGGCCACCTAGGTTTCACCCTCGTCCAGCGACTCCTCCAACGAGGCTACACCGTCCATGCCTCTCTCCAAAAATATGGGGATGAAGACCTACTCAATGGGATTTCCGCAGACTCTAATAAGCTCAAGGTTTTTCGATCTGACCCATTCGATTACCATAGCATAATCGAGGCACTCCGAGGCTGCTCTGGTTTGTTCTACACGTTCGAACCTCCACATGACCAACCAAATTATGACGAATACATGGCAGACGTGGAAGTAAGAGCTGCACACAACGTGTTGGAAGCCTGTGCCCAGACAGAGACAATGGATAAAGTGGTTTTTACTTCCTCAGCAACCGCAGTAGTTTGGAGAGAGGATCGCAAGACCATGGAACTGGATCTGGATGAGAGACATTGGAGTGATGTTAATTTCTGTCGCAAATTCAAGTTATGGCACGGTGTGTCGAAGACAATGGCTGAGAAAAGTGCTTGGGCCTTGGCAATGGATAGAGGAGTGAATATGGTGTCCATCAACGCTGGCTTATTGATGACTCATGATCTCACCATCCAACACCCTTACCTCAGAGGAGCTGCTGAGATGTACGAGGATGGTGTTTTCGTCACCGTTGATTTACCTTTCTTGGTGGATGCCCATATCTGCGTCTACGAAGAAGTCTCATCTTACGGTCGTTATTTGTGTTTTAATCACATCATCAACACCCAAGACGACGCCGTTCAGTTAGCTCAAAAGTTGACTTCCGCTGCTGGTTCTTCCTCGTCGTCTTCATCCTCTCCATCGCCGCAAAGTGGTGACCTCGGTAAGGGTTTTATCGAACAGAAAATTAGCAACAAGAAGTTGAACAAATTGATGGTGAACTTTGAAGCTTGA 921 0.4712 MAPSFDTNTQTVCVMDASGHLGFTLVQRLLQRGYTVHASLQKYGDEDLLNGISADSNKLKVFRSDPFDYHSIIEALRGCSGLFYTFEPPHDQPNYDEYMADVEVRAAHNVLEACAQTETMDKVVFTSSATAVVWREDRKTMELDLDERHWSDVNFCRKFKLWHGVSKTMAEKSAWALAMDRGVNMVSINAGLLMTHDLTIQHPYLRGAAEMYEDGVFVTVDLPFLVDAHICVYEEVSSYGRYLCFNHIINTQDDAVQLAQKLTSAAGSSSSSSSSPSPQSGDLGKGFIEQKISNKKLNKLMVNFEA 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01106 306 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 10 265 - -
Vian10g01106 306 MobiDBLite consensus disorder prediction 266 281 - -
Vian10g01106 306 Gene3D - 4 306 - -
Vian10g01106 306 CDD FR_SDR_e 12 302 - -
Vian10g01106 306 MobiDBLite consensus disorder prediction 266 285 - -
Vian10g01106 306 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 14 172 IPR002225 GO:0003854|GO:0006694|GO:0016616
Vian10g01106 306 FunFam Cinnamoyl-CoA reductase-like SNL6 isoform A 4 306 - -
Vian10g01106 306 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 262 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01106 Vian-Chr10 13296500 13298864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01106 10 304 Monolignol Biosynthesis Gene Families AT5G58490 30.449 3.59e-39 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01106 - - pvu:PHAVU_002G140100g 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01106 10 13296500 13298864 Vian10g01106 10 13296500 13298864 ECH