Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01103 ATGGGCAAGAAGAAACCTAAGGACCCGCAACAAACCCCTCAAACCGATAACGTTTCTTCCCCTTCCAGCATTTTCAACAAGCTCTTCGGCAACGCGCCAGAACAGGGCACCGCAACCGCTGCCTCTCTATTTTCCGACGAAAACCCCTTTCGAAGAAAACCTGTTCCACTTTCCGACACAACCAACCAAGCTCACATCCCTAACAACGGCAACGCCGAGAACCGCGATGCCGGCGACGAGAAGAAGCGCAAGAAGAACAAAGAGAAAAGCTCAGCCCTTGATTCAGTTTCTGTAACCGAAGTTTCGGAGAAATCGGAGAAGAGGAAACGCGGTTCCGATGAAGGAAGAGAAGGAGGCCTTGATTTGGGTGCAGAAGCAGTTGGGAAAAGAAAGAGGAAAAGGGACGAAGTTGAAAGAGAGTGGGAGGAGAAGAGATATGGGCTTATGGAGGAAGTTCAAAAGGAAGGGATTGAGAATAAAACTGTTGGGAACAAGAGGAAGTCGTTGGATGATCCAGCTGATACGATGGTTGCAAAGGAAGGTTTTGATGACGAGAATAAACTTTTGAGGACTGTCTTTGTGGGGAATTTGCCTCTCAAGGTGAAAAAGAAGATTCTGTTGAAGGAGTTTAAAAAGTTTGGTGAAGTCGAGTCTGTGAGGATTCGTTCTGTTCCGATACAAGATACTAAGAAACCTAGAAAGGGAGCCATCCTTGCGAAGAAAATAAATGATGCCGCTGATAGTGTACATGCATACATTGTTTTCAAAACCGAGCAATCGGCACAGGCTTCTTTGTCTCACAACATGTCACTGGTTGAAGGAAATCACATTCGTGTTGATAGGGCATGCCCACCCCGCAAGAAACATAAAGGAGAAAGTGTTCCTCTTTATGACAACAAGAGAACTGTTTTTGTGGGCAACCTCCCATTTGATGTGAAGGATGAAGAACTTTATCAGTTATTTTGTGGTATATCCAACCTGGAATCAAGTGTGGAAGCTGTCAGAGTTGTTCGAGATGCTCATCTTAATGTTGGAAAGGGTATTGCTTATGTGCTATTTAAAACAAAGGAAGCTGCTAAATTTGTTGTTAAGAAAAGGAACTTGAAGCTTCGAGACCGAGAGTTGAGACTCTCTCATGCCAAAGCAGATGCTACCCCATCTAAAAGGTCAAACCCATCCTCAACACAAGCTCCTACCCCTTCTAAAAGGCCAAACACATCATCAACACAAGCTCCTGGTACTCCTTCAAAGAAATTTTCTGTGGCTTCACGGTCTCCTTCGAGCAGTGTTAACAGGTCAAACAGAAAAGCCAATGCATCTTATCAGGGTCTACGTGCTACCAAATCAGATGTGCACAAGAAAACCCAAGGTGGAGAAAAGCCAAAACAACGCCTGACAAAGAGACCTTCAGTGGCTGCCAGAAAGGCTAAAGCAAATTTGCACAAGGAGAAGAGTGGTGCACCAAAACAAGCAGGGATAAAACGCAAGCTTGATAGTCGTACTCCAGACAGCGCCATGCGTAATAAGAAAGTAAAAAAGAACAGGTAA 1548 0.4477 MGKKKPKDPQQTPQTDNVSSPSSIFNKLFGNAPEQGTATAASLFSDENPFRRKPVPLSDTTNQAHIPNNGNAENRDAGDEKKRKKNKEKSSALDSVSVTEVSEKSEKRKRGSDEGREGGLDLGAEAVGKRKRKRDEVEREWEEKRYGLMEEVQKEGIENKTVGNKRKSLDDPADTMVAKEGFDDENKLLRTVFVGNLPLKVKKKILLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDAADSVHAYIVFKTEQSAQASLSHNMSLVEGNHIRVDRACPPRKKHKGESVPLYDNKRTVFVGNLPFDVKDEELYQLFCGISNLESSVEAVRVVRDAHLNVGKGIAYVLFKTKEAAKFVVKKRNLKLRDRELRLSHAKADATPSKRSNPSSTQAPTPSKRPNTSSTQAPGTPSKKFSVASRSPSSSVNRSNRKANASYQGLRATKSDVHKKTQGGEKPKQRLTKRPSVAARKAKANLHKEKSGAPKQAGIKRKLDSRTPDSAMRNKKVKKNR 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01103 515 MobiDBLite consensus disorder prediction 100 140 - -
Vian10g01103 515 Gene3D - 186 290 IPR012677 -
Vian10g01103 515 MobiDBLite consensus disorder prediction 55 70 - -
Vian10g01103 515 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 303 375 IPR000504 GO:0003723
Vian10g01103 515 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 234 IPR000504 GO:0003723
Vian10g01103 515 MobiDBLite consensus disorder prediction 74 91 - -
Vian10g01103 515 MobiDBLite consensus disorder prediction 374 515 - -
Vian10g01103 515 MobiDBLite consensus disorder prediction 384 445 - -
Vian10g01103 515 MobiDBLite consensus disorder prediction 447 466 - -
Vian10g01103 515 MobiDBLite consensus disorder prediction 1 140 - -
Vian10g01103 515 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 281 435 - -
Vian10g01103 515 SUPERFAMILY RNA-binding domain, RBD 184 290 IPR035979 GO:0003676
Vian10g01103 515 SMART rrm1_1 191 280 IPR000504 GO:0003723
Vian10g01103 515 SMART rrm1_1 302 378 IPR000504 GO:0003723
Vian10g01103 515 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 284 IPR000504 GO:0003723
Vian10g01103 515 MobiDBLite consensus disorder prediction 476 509 - -
Vian10g01103 515 CDD RRM1_RBM34 190 280 - -
Vian10g01103 515 Gene3D - 296 389 IPR012677 -
Vian10g01103 515 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 301 382 IPR000504 GO:0003723
Vian10g01103 515 SUPERFAMILY RNA-binding domain, RBD 295 391 IPR035979 GO:0003676
Vian10g01103 515 MobiDBLite consensus disorder prediction 11 44 - -
Vian10g01103 515 CDD RRM2_RBM34 302 378 IPR034221 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01103 192 367 Eukaryotic Initiation Factors Gene Family AT1G71770 26.816 5.47e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01103 K14837 - gmx:100784494 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01103 10 13185704 13193259 Vian10g01103 10 13185704 13193259 ECH