Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01097 ATGGGTAGATCACCGTGTCGTGAGGAGATTAGTGGTGTAAAGAAAGGACCATGGACACCAGAAGAAGATGAGAAGCTGATTGATTATATCAGCAAACACAGCCATGGCACTCATCTGCCAGGGCGAACTGATAATGAGATCAAGAATTATTGGAACACTCACATAAGGAAGAAGCTTCTAAAGATGGGTATTGATCCAGAAACTCACAAGCCAAGGACAGACTTGAATCACCTCATGAGTCTTTCTCAGTTGCTTGGTATGTCAAACTTGAGCAGTGTTATGAGTAGTACTTGGGGCAATAACCATCTTGGTTTACAACCAGACATCACTCAGCTAGCCAAGATACAACTGCTGCAAAATCTTTTGCAACTTATGAACAGCAATTCATTTGTTAACATGGGTAACCCTTACCTCTTTGGCAATCCCAACCTCAACCCTTTATTTCTGAACGGCACAAACCCCCTCCAAACTAAGGAGCCTGTGGTGTTAAGTGGTAGTGAAAGATTTGCTAACCCTAGTGTGTACTCTCAAGCACAAAGCGAGTGCTCTCAGCAACAGGATGTTTCAAAATCATTGGCAGATGTGGAGGGTGGATCCATTCCACAAGATCTTGATTACAGCAAAATTAGCCCCACCAACACCAATCATTCACGTGAAAATCAAGAAGAAAACCCTCTCCCTGCATTAGTTGCTGCCTCTCCGAGGATGGGAACCTTAAACCCAATGGGCAGTGGTTGTGGTAACTTAGCACAATCGAGCGAAGAGTCACCTTCGAACACATTCTTTGATGATTGGGAGAAGTTGTTTGATGATGAAAGAAGCGGTTCCTATTGGAAAGAGATTCTAGAGTAA 852 0.4343 MGRSPCREEISGVKKGPWTPEEDEKLIDYISKHSHGTHLPGRTDNEIKNYWNTHIRKKLLKMGIDPETHKPRTDLNHLMSLSQLLGMSNLSSVMSSTWGNNHLGLQPDITQLAKIQLLQNLLQLMNSNSFVNMGNPYLFGNPNLNPLFLNGTNPLQTKEPVVLSGSERFANPSVYSQAQSECSQQQDVSKSLADVEGGSIPQDLDYSKISPTNTNHSRENQEENPLPALVAASPRMGTLNPMGSGCGNLAQSSEESPSNTFFDDWEKLFDDERSGSYWKEILE 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01097 283 MobiDBLite consensus disorder prediction 174 226 - -
Vian10g01097 283 CDD SANT 17 55 IPR001005 -
Vian10g01097 283 SMART sant 14 57 IPR001005 -
Vian10g01097 283 MobiDBLite consensus disorder prediction 205 222 - -
Vian10g01097 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 59 IPR017930 -
Vian10g01097 283 Coils Coil 279 283 - -
Vian10g01097 283 Pfam Myb-like DNA-binding domain 15 54 IPR001005 -
Vian10g01097 283 Gene3D - 13 61 - -
Vian10g01097 283 SUPERFAMILY Homeodomain-like 13 65 IPR009057 -
Vian10g01097 283 ProSiteProfiles Myb-like domain profile. 10 55 IPR001005 -
Vian10g01097 283 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 37 205 - -
Vian10g01097 283 MobiDBLite consensus disorder prediction 174 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01097 Vian-Chr10 12904833 12905958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01097 13 283 MYB Transcription Factor Family AT5G16770 34.843 1.49e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian10g01097 Myb_DNA-binding 1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01097 K09422 - gmx:778082 352.058