Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01093 ATGAGAGGGAAAGAGCAACGTGGAGCGGAAGACTCGTTCTTCGCTCCAAATGCTTCTGCCGCTCACCACAATTTGGGCTCACCAAACCACCGCAGGCCCACACGTAGAAACCGAGGCCCACACCAATCGAACTTGAAATACCGTGTCGTGAACAAGCCTGAAGCGGTTTTTTCCTTCAACTCTCACTCCGTTGAGGATGTCAACGTGGGCGTAACTGTCGCATCCCTAAATCACCATGGCGAGGACGCGGACGGTGCCTCCGAGCTCAACACCGTTGACGGCACTGATCGCGTGGCTTATTCCAGCAAGGTCGGGGAAGGATGCGGCGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGGTGATGGTGATGGTGATGGTGATGGTGATGGTGAGGGCGATATTCAGACCAGACTTGATAAGCTGCTCTGTAAAATTGAGGAACCTGATTTGTCCGAGGAGCAGATCAGAATCAATGATCAATTGCAACAAGATGAGATACTTGTGGTGGAGTCAATTTATGGAGAAAATGTTTTCGGCCTTGAGAGATGGAAAGGCTTGCGTTGCTTTCAGATACATATACACATTGATGTTTTGGGTGAAATAGCCATCACTGCTAAGTTGAACTCTCTTAATCAACTTGAGACTGTAAGCCGCAGTTCAGATGAATTCTTATACACTTTCAAAGTCCACTATCTTCCACCGGTTGTTTTGACTTGTTTACTACCTAAGTCGTACCCTAGCCACCAACCACCTATTTTTACACTCTCTGTTAAGTGGTTGGAACCTGCGAAGATTCTGAGACTGTGTTCCAAGTTGGATTCAATATGGGCTGAACAACAAGGGCAGGAAGTAATTTACCCTTGGGTAGAATGGTTGCATGGTTCTTCTCTTTCTCATCTGGGATTTGATGAAGAAATCACACTTGGGCCTTATGGCATGAATGTTGTCCAGGATGAGCGTGTTGTTTCAGGAGCTGAATGCATTGACATTGATATTCCTTTTCTACGAAATTACAATGATAAGAGACACAATGAGAACTTCCTCAAAGAATTACATCAATGTAACATTTGCTTTGGTGAATATGCAGGTTCCGAGTTTATCCGGATACCATGTATGCATTTTTTTTGCCTCAAATGCTTGCAGACCTTTGCCCAGATACATGTAAAGGAAGGAACTGTTAGTAATCTTCAATGTCCTGAAGCAAAATGTACAGTCATGATTCCACCTGGCCTTTTAAAACACTTGCTAGATGACAGAGATTATGAGCGCTGGGAATCCATGATGTTGGAAAAAACACTTGCATCAATGTCTGATGTTGTTTATTGTCCAAGATGTGAAACCCCCTGTTTAGAGGATGAAGACCAGCATGCTCAATGCCCAAAATGTTATTTTAGTTTTTGTACCCTTTGCAGGGAACGACGCCATGTTGGCATAGCATGCATGAGTCTTGATATGAAGCTTCAGATTTTGCAGGACCGTCAAAATTCATCCCATTTAAAGGAAGATCAAAAGCGTAGAGAACGTGAAAAGATTAATGAAATGCTCAGTATGAAAGAAATTCATCGTGATTCCAAGCTATGCCCCTCTTGTGACATGGCAATTTCTCGAACTGAAGGTTGTAACAAGATGAAATGTGGTAATTGTGAACAATACTTTTGTTACCGCTGCAACAAGGCAATTGATCCATCAGATCCTTATGGACATTTCAGGGATGGTTCATGTGAGCTGTTCCCAAGAGAAATGGTCGAGTCCTGGCAAGAGCGAATAAATAATCGCCAGGTTGTAGGACAATTACAGGCTGAGCTTTTTCCTCAACGAGGCTTGACATGTCCTAATTGTCGTCAATTTAATGCAAAGATTGGAAATAATAATCACTTGTTTTGCTGGGCATGCCAAAGCCACTACTGCTACTTGTGCAAAGAGATTGTGAGGCGCGGCACCAAGCATTATGGACCCAAGGGCTGCAAACAACATTCCGAGGGCTAG 2010 0.4358 MRGKEQRGAEDSFFAPNASAAHHNLGSPNHRRPTRRNRGPHQSNLKYRVVNKPEAVFSFNSHSVEDVNVGVTVASLNHHGEDADGASELNTVDGTDRVAYSSKVGEGCGDDDDDDDDDDDDDDDDDDGDGDGDGDGDGEGDIQTRLDKLLCKIEEPDLSEEQIRINDQLQQDEILVVESIYGENVFGLERWKGLRCFQIHIHIDVLGEIAITAKLNSLNQLETVSRSSDEFLYTFKVHYLPPVVLTCLLPKSYPSHQPPIFTLSVKWLEPAKILRLCSKLDSIWAEQQGQEVIYPWVEWLHGSSLSHLGFDEEITLGPYGMNVVQDERVVSGAECIDIDIPFLRNYNDKRHNENFLKELHQCNICFGEYAGSEFIRIPCMHFFCLKCLQTFAQIHVKEGTVSNLQCPEAKCTVMIPPGLLKHLLDDRDYERWESMMLEKTLASMSDVVYCPRCETPCLEDEDQHAQCPKCYFSFCTLCRERRHVGIACMSLDMKLQILQDRQNSSHLKEDQKRREREKINEMLSMKEIHRDSKLCPSCDMAISRTEGCNKMKCGNCEQYFCYRCNKAIDPSDPYGHFRDGSCELFPREMVESWQERINNRQVVGQLQAELFPQRGLTCPNCRQFNAKIGNNNHLFCWACQSHYCYLCKEIVRRGTKHYGPKGCKQHSEG 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01093 669 SUPERFAMILY RING/U-box 430 492 - -
Vian10g01093 669 MobiDBLite consensus disorder prediction 1 49 - -
Vian10g01093 669 MobiDBLite consensus disorder prediction 101 141 - -
Vian10g01093 669 Pfam RWD domain 168 301 IPR006575 GO:0005515
Vian10g01093 669 ProSitePatterns Zinc finger RING-type signature. 379 388 IPR017907 -
Vian10g01093 669 SMART RWD2001b 172 307 IPR006575 GO:0005515
Vian10g01093 669 CDD Rcat_RBR_RNF14 520 585 IPR047548 GO:0008270
Vian10g01093 669 Gene3D - 503 611 - -
Vian10g01093 669 CDD RING-HC_ITT1-like 356 415 - -
Vian10g01093 669 ProSiteProfiles RWD domain profile. 172 307 IPR006575 GO:0005515
Vian10g01093 669 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 220 576 IPR031127 GO:0004842|GO:0016567
Vian10g01093 669 SUPERFAMILY RING/U-box 614 666 - -
Vian10g01093 669 ProSiteProfiles Zinc finger RING-type profile. 362 410 IPR001841 -
Vian10g01093 669 FunFam RBR-type E3 ubiquitin transferase 503 612 - -
Vian10g01093 669 Pfam IBR domain, a half RING-finger domain 525 569 IPR002867 GO:0008270
Vian10g01093 669 Pfam IBR domain, a half RING-finger domain 430 488 IPR002867 GO:0008270
Vian10g01093 669 SMART ibrneu5 517 582 IPR002867 GO:0008270
Vian10g01093 669 SMART ibrneu5 430 488 IPR002867 GO:0008270
Vian10g01093 669 SUPERFAMILY RING/U-box 521 577 - -
Vian10g01093 669 SUPERFAMILY RING/U-box 357 441 - -
Vian10g01093 669 SMART ring_2 450 538 IPR001841 -
Vian10g01093 669 SMART ring_2 362 409 IPR001841 -
Vian10g01093 669 SMART ring_2 618 647 IPR001841 -
Vian10g01093 669 FunFam RBR-type E3 ubiquitin transferase 357 441 - -
Vian10g01093 669 MobiDBLite consensus disorder prediction 108 137 - -
Vian10g01093 669 Gene3D Ubiquitin Conjugating Enzyme 159 308 IPR016135 -
Vian10g01093 669 CDD BRcat_RBR_RNF14 441 492 - -
Vian10g01093 669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 357 445 IPR013083 -
Vian10g01093 669 ProSiteProfiles TRIAD supradomain profile. 358 588 IPR044066 -
Vian10g01093 669 MobiDBLite consensus disorder prediction 28 42 - -
Vian10g01093 669 SUPERFAMILY UBC-like 166 301 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01093 Vian-Chr10 12705093 12711343 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01093 361 592 C3H Transcription Factor Family AT2G31770 25.417 1.35e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01093 K11971 - gmx:100500662 1077.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01093 10 12705093 12711343 Vian10g01093 10 12705093 12711343 ECH