Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01089 ATGGATAGCGGTGCGTCCGCTCCGACGGCGCCGATTCCGAACGCCAACGCGCCGCCGCCATTTCTGAGCAAGACTTATGACATGGTCGAAGACCCTTCCACCGACGCGATCGTGTCATGGAGCGCAACCAACAACAGCTTCATCGTGTGGGACCCACCCGAATTTGCCAGGGACCTTTTGCCCAAATACTTCAAACACAACAACTTCTCCAGCTTCGTTAGACAGTTAAACACTTATGGTTTCAGAAAGGTTGATCCAGATCGTTGGGAATTTGCAAATGAGGGTTTTTTGAGGGGTCAAAAGCACTTGCTTAGGAATATAACACGAAGAAAACCTGCCCATGGTCAAAATCATCAACAGGCTCAGCAACCCCATGGACAGAGTTCATCAGTAGGGGCATGTGTTGAAGTCGGAAAGTTTGGGCTTGAGGAAGAGGTTGAGAGGCTTAAAAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGATTGAGGCAGCAGCAACAGACCACTGATAACCAGTTGCAAACAATGGTTCAGCGCCTTCAGGGAATGGAGCAACGACAGCAGCAAATGATGTCATTCCTTGCGAAAGCTGTTCAGAGCCCTGGATTCTTTGCTCAGTTTGTACAACAAAATGAGAGCAATAGGCGCATAAGTGAAGTCAACAAAAAGCGTAGGCTCAAGCAGGAAGGTATTGCAGAAACAGTGAGTGCTGCTACTCCAGATGGACAAATCGTTAAATATCAACCTCTGGCGAATGAAGCTGCAAAAGCCATGCTTAAGCAGATCATGAAATGGGATACTTCTCGTGTAGAATCTTTTAATAAAAACCCCGAGGAGTACATCATTGGTGATGCTTCATCATCTTCCAGTGGAATGGACAGTAGTGGCTCTTCAGGCTGGACTTCCGGAGTCACTCTTAAGGAGGTATCTCCAGCTTCGGTGCAGTCTTCACACGTTCCAGCTGCTACTGGCACCCAAGGGCATGTCCGCCCGACTGTTAAACCCGAATTTCCGTCTGTACCACAAGCAGTAGCTTCTGAAAATGTTACAAAGGATGGAGGACATGGTGTGCCTTCTATCCCCGTTTCTCAAGCAGATATGGTGATCCCTGATCTTCCTCCAATAACAGAGATGGTGACAGGAAATATGCTTGATATTCCCGAAGAAAATTATATGGCAACTGAATCGGATGAGGGATATATGGATCCTTCACTGGGCGATGCCGGGTCATTTCCCATTGATTTTGAGGTCATTTCACCTGATAACATTGATGATTTCTTAGGAAATCCTTCTATTTGGGATGAAATTTTGCAAACTCCAGTTCCAGAGGATATCGACACCAATATTGCCGATGTATCCAACGGGAATGAGGTCCAGTCAACGGAAAATGGATGGAGCAAAACTCAACGTATGGATCACCTTACAGAGCAGATGGGTCTTCTTTCTTCTGATACAAAACGAGTTTGA 1470 0.4639 MDSGASAPTAPIPNANAPPPFLSKTYDMVEDPSTDAIVSWSATNNSFIVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRNITRRKPAHGQNHQQAQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQNESNRRISEVNKKRRLKQEGIAETVSAATPDGQIVKYQPLANEAAKAMLKQIMKWDTSRVESFNKNPEEYIIGDASSSSSGMDSSGSSGWTSGVTLKEVSPASVQSSHVPAATGTQGHVRPTVKPEFPSVPQAVASENVTKDGGHGVPSIPVSQADMVIPDLPPITEMVTGNMLDIPEENYMATESDEGYMDPSLGDAGSFPIDFEVISPDNIDDFLGNPSIWDEILQTPVPEDIDTNIADVSNGNEVQSTENGWSKTQRMDHLTEQMGLLSSDTKRV 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01089 489 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian10g01089 489 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian10g01089 489 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian10g01089 489 SMART hsfneu3 17 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian10g01089 489 ProSitePatterns HSF-type DNA-binding domain signature. 60 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian10g01089 489 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 291 IPR027725 -
Vian10g01089 489 FunFam Heat shock transcription factor 1 14 111 - -
Vian10g01089 489 Gene3D - 14 111 IPR036388 -
Vian10g01089 489 Pfam HSF-type DNA-binding 21 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vian10g01089 489 Coils Coil 139 166 - -
Vian10g01089 489 SUPERFAMILY "Winged helix" DNA-binding domain 16 110 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01089 Vian-Chr10 12537196 12540675 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01089 10 486 HSF AT1G32330 55.689 2.70e-171 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vian10g01089 HSF_DNA-bind 1.8e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01089 K09419 - gmx:100815121 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01089 10 12537196 12540675 Vian10g01089 10 12537196 12540675 ECH