Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01086 ATGAGCTTTCAGGACATCGAGTCTGGACGGCCTTTTGCTACCGGGCGCAACCTGATCAACGGCAAACAAGATCCTACGCAAGCGGTGGCTTCTGGCATATTTCAGATCAACACCGCCGTCTCCACGTTCCAGCGACTCGTCAACACCCTCGGAACCCCCAAGGACACGCCCGAACTCCGCGAGAAGTTGCATAAGACAAGACTGCACATTGGACAATTGGTGAAGGATACTTCGAATAAACTTAAGCAAGCTAGTGAGATTGATCACAATGCTGAAGTTAATGTAATGCTTTCTACTTTAATTCAACATGCAAAGCGTCTTAGACTTGTTTTTGCGAATAAGAAGATAGCAGATGCTAAGCTTGCAAAGGATTTTCAGGCGGTGTTGAAAGAGTTTCAGAAGGCTCAGCGTCTTGCAGCTGAGAGGGAAACAGCTTACACACCTTTTGTTCCACAAGCAGTTCTTCCATCCAGCTATACAGCTGGCGAAGTAGCCATTAGTTCTGATAAGACTCCTGAACAGCGGGCCCTTCTTGTCGAATCTAGAAGACAGGAAGTGTTATTCTTAGATAATGAGATTGCATTCAATGAGGCTATCATTGAGGAAAGAGAGCAAGGCATTCAAGAAATCCATCAGCAAATTGGTGAAGTGAATGAGATTTTCAAAGATCTTGCTGTGCTTGTCCATGAGCAAGGAACAATGATTGATGATATTGGGTCCAATATTGAGCATTCTCATGAAGCAACTGCACGAGCAAAATCTCAACTTGCCAAAGCATCAAAGACGCAAAGATCAAATTCATCTTTGACGTGCTTGCTTTTGGTGATATTTGGGATCGTGCTTCTAATCGTCATCATTGTCCTTGCTGCTTAG 873 0.4433 MSFQDIESGRPFATGRNLINGKQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSNKLKQASEIDHNAEVNVMLSTLIQHAKRLRLVFANKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAGEVAISSDKTPEQRALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIHQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIEHSHEATARAKSQLAKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01086 290 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 197 259 IPR000727 -
Vian10g01086 290 ProSitePatterns Syntaxin / epimorphin family signature. 203 242 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vian10g01086 290 FunFam Syntaxin-22 like 190 290 - -
Vian10g01086 290 SMART SynN_4 13 144 IPR006011 GO:0016020
Vian10g01086 290 Pfam SNARE domain 233 285 IPR000727 -
Vian10g01086 290 Gene3D - 191 290 - -
Vian10g01086 290 FunFam Syntaxin-22 25 64 - -
Vian10g01086 290 CDD SNARE_Qa 200 258 - -
Vian10g01086 290 Gene3D - 20 150 - -
Vian10g01086 290 PANTHER SYNTAXIN 26 282 IPR045242 -
Vian10g01086 290 CDD SynN 23 164 IPR006011 GO:0016020
Vian10g01086 290 SUPERFAMILY t-snare proteins 22 252 IPR010989 GO:0016020|GO:0016192
Vian10g01086 290 SMART tSNARE_6 192 259 IPR000727 -
Vian10g01086 290 Pfam Syntaxin-like protein 30 146 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01086 Vian-Chr10 12443690 12446504 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01086 1 278 SNARE and Associated Proteins AT5G46860 74.460 1.27e-145 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01086 - - gmx:100810149 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01086 10 12443690 12446504 Vian10g01086 10 12443690 12446504 ECH
Vian10g01086 10 12443690 12446504 Vian1g02059 1 24837708 24841154 PCT