Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01075 ATGGTGGAAAGAAGAGTGACTTTATCTAAGGAAGTTAGGAATGGGTTAGAATTTTTGAAGCGTAAAAGGCTTCAGCGTGCACAATCTGTCACTGCTACCCAAACAAATATTGCTAACATGATGAACAGAAGTGGAGGAGATGCTTTAAGAGACTCAGCATCATGTGGCATGAGATTGCATGGCAATGCTGATGTCTTTTCCAAACGAAAGGTGGATAAGTTTGATACAAATGACCTGGACTGGACTGAAACAATTCCAGAGTGTCCTGTGTATTCTCCAACAAAGGAGGAATTTGAGGATCCTTTGGTTTATTTGCAAAAGATAGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTATCTCTCCTTTGAGCGCTTCAGTACCTGCTGGGGTTGTATTAATGAAGGAGAAAGCAGGTTTCAAGTTTACAACTAGAGTGCAGCCTCTTCGCCTTGCTGAATGGGATTCTGAAGACAAAGTCACGTTTTTTATGAGTGGAAGAAATTATACATTTCGTGATTTTGAGAAAATGGCAAACAAAGTATTTGCTAGAAGATATTGCAGTGCTGGATGCCTTCCTGCCACATACTTGGAAAAAGAGTTTTGGAATGAAATTGGTTGTGGGAAGATGGAAAGTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCATCTTCTCCCATTGACCAGCTTGGGAACAGCAAATGGAATTTGAAGAAACTATCAAGGTTGCCCAAATCAAGTTTACGGCTCTTGGAAACATTAATTCCGGGAGTAACCGAGCCCATGTTGTACATTGGAATGCTGTTCAGCATGTTTGCGTGGCATGTGGAAGATCATTATTTGTACAGCATTAATTATCATCACTGTGGCGCATCCAAAACATGGTACGGTATTCCAGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACATGTGTACACTAATGATATTTTGTCAAGTGATGGGGAAGATGGTGCATTTGATGTTCTTCTGGGGAAAACAACTCTATTTCCACCAAATATTTTGTTAGAGCATGAAGTTCCTGTCTACAAGGCCGTTCAAAAGCCTGGGGAGTTTATAATAACTTTCCCTAGAGCATATCATGCTGGCTTCAGTCATGGTTTCAATTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCGTTAGGGGCTATTGCTAGCAGAAGATATGCACTTCTTAACAGGGTTCCTTTACTGCCCCATGAAGAACTTCTATGCAAAGAAGCAATGCTTCTCCGTACATGCTTGGAACTTGAAGATTCGGATTTTCCCTCTTCAGACTCTCTTTCTCATAATAGCATTAAGATTTCATTTGTTAACTTGATGCGATTCCAGCATTGCGCGCGATGGTTTCTAACGAAATCAAGGGCTTGTATAAGCGTCTCTTCTCATTCCCATGGCACAATTCTCTGTAGCCTTTGCAAACGTGACTGTTACGTAGCTTATGTTGATTGCAACTGTCATATGCATCCTGTATGCCTACGTCACGATGTTGATTCTCTTGACTTCACCTGTGGGAGCAAACACACACTTTATTTGAGGGAGGATATTATGGATATGGAAGCCGCAGCCAAGATGTTTGAGCAGGAAGATGGGATATCACATGAGATAAGGAAGCAAACCAATAGTGGTCAAAACATGTATGCATATCCTTTGTCAAATATGTTTCAGAGAGCCGAGGCAAATGGATACATTCCTTATTGTGAGCTAAAACTTGATTCTGTTGTTGAATTTTATACAACTCCAGAGCACTCAACAAATAATCAAGAATACAGTACACAGAATCAATCTGTCTTTGTACATTGCTCTGAAAATCAAATACCATTGGTGTCTGACGTTTCCTTTTCTTCAGCCACATCCACTCTTTCTGAATCCCTTGAGAGCTTCTCTACTCCCAAAAATGCTGAAGGGCATACAAATATCAATTTAGGAGGAGGTATTGTTGATTTTGAGGATTTTGGTGAAAGAATACCCAACAGTGCATGTGAATCTTCGTTATCCCCTGCTGTGTGCCATGAAAGCTCGATTAAACCACAGAGTGTTGATACAAAGCCCATCGCGGACGAGAGTGATTCTGATTCAGAGATGTTTAGGGTAAAGCGCCCTTCTTCTCTGAAAGCAGAGAGGAGAAATATGAATGATGTCACGTCTTCAAAGCAGACTGAGCAGCAGGGACTAAAACGGCTGAAGAAAGTCCTTCCTGAAGGAAGGAGTGATCAACCAATGGATTTCAGAACTCAGGAGTTAAGTTACAAACATGTTAGCCATAAAAGTCGTGTTCAAGTCTCCTCCAGGGACAGATTTGCAAGGGGTAATGGCATTCCCATTTCGATAAGATATAAGAAGTTAGGGAACGAGGAAATAAGTATGCAACGAGATCACCACCAACACCGGAAAGATAGGTTCTTGCAGCAACAGACATTTAGGGAACCGCCTTCCATTGAGATTGAGCCAAAGCGCCTTAAAGTCCGAGGCCCTTCGTTTTTAGGCTTAGAGAGCAGATTGAATTGA 2553 0.4136 MVERRVTLSKEVRNGLEFLKRKRLQRAQSVTATQTNIANMMNRSGGDALRDSASCGMRLHGNADVFSKRKVDKFDTNDLDWTETIPECPVYSPTKEEFEDPLVYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDSEDKVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPATYLEKEFWNEIGCGKMESVEYACDVDGSAFSSSPIDQLGNSKWNLKKLSRLPKSSLRLLETLIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALEFERVVREHVYTNDILSSDGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMLLRTCLELEDSDFPSSDSLSHNSIKISFVNLMRFQHCARWFLTKSRACISVSSHSHGTILCSLCKRDCYVAYVDCNCHMHPVCLRHDVDSLDFTCGSKHTLYLREDIMDMEAAAKMFEQEDGISHEIRKQTNSGQNMYAYPLSNMFQRAEANGYIPYCELKLDSVVEFYTTPEHSTNNQEYSTQNQSVFVHCSENQIPLVSDVSFSSATSTLSESLESFSTPKNAEGHTNINLGGGIVDFEDFGERIPNSACESSLSPAVCHESSIKPQSVDTKPIADESDSDSEMFRVKRPSSLKAERRNMNDVTSSKQTEQQGLKRLKKVLPEGRSDQPMDFRTQELSYKHVSHKSRVQVSSRDRFARGNGIPISIRYKKLGNEEISMQRDHHQHRKDRFLQQQTFREPPSIEIEPKRLKVRGPSFLGLESRLN 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01075 850 MobiDBLite consensus disorder prediction 738 755 - -
Vian10g01075 850 SUPERFAMILY Clavaminate synthase-like 166 421 - -
Vian10g01075 850 Pfam jmjN domain 89 121 IPR003349 -
Vian10g01075 850 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Vian10g01075 850 Pfam JmjC domain, hydroxylase 265 388 IPR003347 -
Vian10g01075 850 Gene3D Cupin 88 445 - -
Vian10g01075 850 PANTHER LYSINE-SPECIFIC DEMETHYLASE 81 806 - -
Vian10g01075 850 ProSiteProfiles JmjC domain profile. 235 405 IPR003347 -
Vian10g01075 850 MobiDBLite consensus disorder prediction 698 729 - -
Vian10g01075 850 MobiDBLite consensus disorder prediction 687 755 - -
Vian10g01075 850 SMART cupin_9 232 405 IPR003347 -
Vian10g01075 850 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
Vian10g01075 850 SMART JmjN_1 87 128 IPR003349 -
Vian10g01075 850 FunFam Lysine-specific demethylase isoform A 83 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01075 Vian-Chr10 12286418 12291799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01075 85 423 JUMONJI Transcription Factor Family AT1G30810 35.910 5.84e-62 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vian10g01075 JmjC 1.8e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01075 - - gmx:100798611 1485.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01075 10 12286418 12291799 Vian10g01075 10 12286418 12291799 ECH