Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01034 ATGGCAGCTTGCACTGTGTACTCAACACAATCTCTCAGCACAAATTGCTCCATCTCAACCCCATCAAAAACACAACTGAGTTTTCACCAAAAGCAGGTAGTATTCTACACCACAAGCAGGAGGAACAGCAAGAGGGGCATCAACAGTGGCAGAAGCTATGTGATAACATGTGCAGCAAGTGACCAACAGACAGTGGTGATTGGTCTGGCTGCTGACTCAGGTTGTGGAAAAAGTACCTTCATGAGGAGGCTTACCAGTGTGTTTGGAGGAGCAGCAGAACCACCAAAGGGTGGCAACCCTGATTCCAACACTCTCATCAGTGACACCACCACAGTCATATGCTTGGATGATTACCACTCATTGGATAGAACTGGCAGAAAGGAGAAGGGAGTCACTGCCCTTGACCCCAGAGCCAACGATTTTGATCTGATGTATGAACAAGTTAAAGCAATCAAAGATGGAATTGCTGTTCAAAAACCAATCTACAACCATGTCACTGGTCTCTTGGACCCCCCTGAGCTCATCAAACCTCCCAAAATCTTAGTCATTGAAGGTTTGCACCCAATGTTTGATTCCCGTGTCAGAGACCTCTTGGACTTTAGCATCTACCTAGACATTAGCAATGAGGTGAAATTCGCTTGGAAAATTCAGAGAGACATGGCAGAGCGTGGACATAGTCTTGAAAGCATCAAGGCTAGCATTGAAGCAAGAAAGCCTGATTTTGAAGCATACATTGATCCACAAAAGCAATATGCAGATGCTGTGATAGAAGTGTTGCCAACTCAACTGATTCCAGATGACAATGAGGGTAAGATTTTAAGAGTGAGGTTGATACAGAAAGAAGGAGTTAATTTCTTCAGTCCAGTTTACTTGTTCGATGAGGGCTCTACCATTTCATGGATACCATGTGGAAGGAAGCTTACATGCTCCTACCCTGGCATCAAATTCTCCTATGGACCAGACACTTACTACGGAAATGAGGTGTCAATTGTAGAAATGGATGGACAGTTTGACAGATTAGATGAACTAATATACGTTGAGAGTCACCTAAGCAACCTTTCTACAAAGTTCTATGGAGAAGTTACTCAACAGATGTTGAAGCATGCTGATTTCCCCGGCAGCAACAATGGCACAGGTCTCTTCCAAACCATAGTTGGTTTGAAGATAAGAGATCTATATGAACAGATAGTAGCCACCAGGGCTGAGACTCCAGTAGCTGCAAAAGCTTAG 1230 0.4407 MAACTVYSTQSLSTNCSISTPSKTQLSFHQKQVVFYTTSRRNSKRGINSGRSYVITCAASDQQTVVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKAIKDGIAVQKPIYNHVTGLLDPPELIKPPKILVIEGLHPMFDSRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFEAYIDPQKQYADAVIEVLPTQLIPDDNEGKILRVRLIQKEGVNFFSPVYLFDEGSTISWIPCGRKLTCSYPGIKFSYGPDTYYGNEVSIVEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIVATRAETPVAAKA 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01034 409 Pfam Phosphoribulokinase / Uridine kinase family 66 264 IPR006083 GO:0005524|GO:0016301
Vian10g01034 409 FunFam Phosphoribulokinase 61 291 - -
Vian10g01034 409 CDD PRK 66 355 - -
Vian10g01034 409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 334 IPR027417 -
Vian10g01034 409 PANTHER URIDINE KINASE 58 311 - -
Vian10g01034 409 PRINTS Phosphoribulokinase family signature 180 198 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vian10g01034 409 PRINTS Phosphoribulokinase family signature 215 232 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vian10g01034 409 PRINTS Phosphoribulokinase family signature 71 88 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vian10g01034 409 PRINTS Phosphoribulokinase family signature 233 256 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vian10g01034 409 Gene3D - 61 301 IPR027417 -
Vian10g01034 409 ProSitePatterns Phosphoribulokinase signature. 215 228 IPR006082 GO:0005524|GO:0005975|GO:0008974
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01034 Vian-Chr10 11425557 11428581 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01034 46 256 PRT Gene Family AT1G55810 25.806 1.18e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01034 K00855 - gmx:100777515 771.541