Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01011 ATGTTTACATGCATAGCGTGTACGAAGCAAACGGCGGAGGAAGGGGAAGAAGGTTGTGAGAGTGGCACGTCGAGTACAAAAGAAGTTGTCAAAAGTCTGAGTGCGCAGTTAAAGGATATGGTACTGAAGTTTTCAGGTTCTTACAAGCAGTGCAGACCTTGCACAGGGTCCAGTGCCTACAAGAAAGGACAGAGGCCATATCCTGACTTTGACACCATTTCAGAAGGGGTTCCATACCCCTATATTGGAGGAGCAAGCTCAACTTCAACCCCTGCTTGGGACTTCACAAGCTCCTATATCCCTGGTGGTAGATCAGACCAAAGATTTATGGGTGGCTTGAATGGTGATAGGACCTCTAGAGGCCCTGAGTCAGCACCAGCATGTGATGTTGTTGTTGAGGAAGAGGATGAAACCAAGGAGTGGATGGCACAGGTGGAACCAGGTGTTCACATTACCTTTGTGTCTCTTCCTAATGGTGGAAATGATCTCAAAAGAATTCGCTTCAGCCGAGAGATTTTTGACAAGTGGCAAGCTCAAAAATGGTGGGGTGAGAATTATGACAGAATCATGGAGCTTTACAATGTCCAGAGATTCAATCGACAAGCTCTTAACACTCCTTCCAGATCTGAGGATGAGCAAAGAGATTCTTCTTACTCAAGACTGACATCTGGACAAGAAAGCCCGGGGTCGATGTCGTTGAAGGAATGGACACCAAGGAATCACTATAAACCCTCATTGAATAACCAATCTGAAGCTATGGATCAAGGTGGTGGTCCAAACTTCCCAGCAGGATCATCTGTGGAAGCATCTAGGACAACCACTTCTTCTAGAGACGAGCCTTCAATGAGCAATGCTAGTGACCTGGAGGCAGAATGGATTGAGCAAGATGAACCTGGAGTGTACATCACGATCAGGCAACTAGCTGATGGAACCAAGGAGCTTCGTCGTGTCAGATTCAGCCGGGAGAGATTTGGAGAGGGGCATGCAAAGAAATGGTGGGAAGACAACAGAGAAAGAATACAAGCTCAATACCTTTGA 1038 0.4663 MFTCIACTKQTAEEGEEGCESGTSSTKEVVKSLSAQLKDMVLKFSGSYKQCRPCTGSSAYKKGQRPYPDFDTISEGVPYPYIGGASSTSTPAWDFTSSYIPGGRSDQRFMGGLNGDRTSRGPESAPACDVVVEEEDETKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREIFDKWQAQKWWGENYDRIMELYNVQRFNRQALNTPSRSEDEQRDSSYSRLTSGQESPGSMSLKEWTPRNHYKPSLNNQSEAMDQGGGPNFPAGSSVEASRTTTSSRDEPSMSNASDLEAEWIEQDEPGVYITIRQLADGTKELRRVRFSRERFGEGHAKKWWEDNRERIQAQYL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01011 345 ProSiteProfiles BRX domain profile. 290 345 IPR013591 -
Vian10g01011 345 MobiDBLite consensus disorder prediction 218 234 - -
Vian10g01011 345 MobiDBLite consensus disorder prediction 265 283 - -
Vian10g01011 345 Pfam Transcription factor BRX N-terminal domain 22 54 IPR027988 -
Vian10g01011 345 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 345 IPR044532 -
Vian10g01011 345 Pfam Transcription factor regulating root and shoot growth via Pin3 139 193 IPR013591 -
Vian10g01011 345 Pfam Transcription factor regulating root and shoot growth via Pin3 289 344 IPR013591 -
Vian10g01011 345 MobiDBLite consensus disorder prediction 203 286 - -
Vian10g01011 345 MobiDBLite consensus disorder prediction 241 255 - -
Vian10g01011 345 ProSiteProfiles BRX domain profile. 139 194 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01011 Vian-Chr10 11101668 11106349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01011 1 345 Major Intrinsic Protein MIP AT1G31880 64.507 5.56e-156 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01011 - - vum:124826203 634.024