Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01009 ATGATGATTAGATGTGATGTGAACAATATTATACATAGGTCTCATCCTCTTTCCTTCTCCCCCTCTTCTTTCAGATCCGATCCAATCCCTTTCGGATCCTTCCGATTGCCTTTTCGCTTTAGTTTCGCCATCGTTTTTGTGCTTTTCCTTTCTTGTTTTGTTAGGCTTTTGACTGTTGACCGTCGACCAATTGAATTTGTTTGTTCAATTGGTTCTGGTTGGCTTCGAGATAGGATTCTGGTTGGTCTGGGTTTGAATCTAAAGGATCGTGATTTATATTTTGAGACATGGAGGGAGTTTGTTTCTGGACAAATTGCTACCAGTATCGGTTTTTTGCATTCCAAGAAGTGCTTGATTGGCGATTTTTCATCCTTGGAGATTTTCTTCGGGTTTCCTTTGTTAATTGCACTTAGTGTTCTGCTCCCGTTTGATGATCAGCACAGGTGTTCCCTGGGAACAATGGAGAGGTACAACTTAATTAAGGAAGTTGGTGATGGGACTTTTGGGAGTGTGTGGAGAGCTATAAACAAACAGACTGGGGAAGTTGTTGCTATCAAGAAGATGAAGAAGAAGTATTACTCTTGGGAGGAGTGTGTAAACCTAAGAGAAGTCAAGTCGCTGCGAAAAATGAACCACCCAAATATTGTCAAGCTGAAGGAAGTTATTCGAGAAAGTGACATTTTGTACTTTGTTTTTGAATACATGGAATGCAACCTATACCAGCTTATGAAAGATAGGGAAAAACTGTTTTCTGAAGGTGAAGTTAGAAATTGGTGTTTTCAAGCTTTCCAAGGTCTTGCTTACATGCACCAGCGTGGGTACTTCCATCGTGACCTGAAGCCCGAAAACTTGCTGGTTACCAAGGATATCATCAAAATTGCTGATTTTGGCCTAGCTCGAGAGATCACTTCACAACCACCCTACACTGAATATGTCTCCACACGATGGTACCGTGCTCCTGAAGTGTTGCTTCAGTCTTATATGTATACCTCTAAAGTTGACATGTGGGCAATGGGTGCTATAATGGCTGAGCTTTTCTCTCTTCGTCCCCTGTTCCCGGGTGTCAGTGAGGCAGATGAGATATACAAAATATGTGGTGTGATAGGCAATCCAACCCATGAATCTTGGGATGATGGACTCAAGCTTGCAAGGGATATCAACTACCAATTTCCACAGCTTGCTGGTGTGCATCTTTCTGCACTGATCCCGTCTGCAAGCGATGATGCAATCAGCCTTATCAAATCACTTTGCTCCTGGGATCCCTGCAAGAGGCCAACAGCTTCTGAGGCCCTTCAGCATCCTTTCTTTCAGAGTTGCTTCTATATTCCTCCATCCCTTCGCAGCAGAGCAGTAGCGAGAACTCCACCATCTGCTGGAACCAGAGGAGCCCTGGATCACCAAGGGGTCAAGAGATATTCTGGTGTTTTATCCAATTCAAAGACCACCAATAATTTTTCTTCCCAGAAATTACATCCTCCTTTAGCTTCAGGTGTGCAACGGAAGCTGGATATGGTAAATCAGGATGGAATTAAGAATGAAAAACCTATGAGGAGTACTAAACCAAAGTATCGACAGCCAGGAAAGGACAGCCCAACTTTTACGAACAAGGGGAGATATGAGCGTGGGGTTTCAGAAGCAGCTGAGAAATTGGGCAATTTGTCTGTTAGTACAAGAAGACAATCAATGGGACATCCCCGTCCTCCACCAATGAAGGCTGGAGTGAATTGGATGTCTGAAACTGGAAACTTCATCCTTGGGTCCGCCCAGCAAATTCAGACTGGAAGAACTTTCACCCGAAAAGTTGCCGGATGA 1812 0.4371 MMIRCDVNNIIHRSHPLSFSPSSFRSDPIPFGSFRLPFRFSFAIVFVLFLSCFVRLLTVDRRPIEFVCSIGSGWLRDRILVGLGLNLKDRDLYFETWREFVSGQIATSIGFLHSKKCLIGDFSSLEIFFGFPLLIALSVLLPFDDQHRCSLGTMERYNLIKEVGDGTFGSVWRAINKQTGEVVAIKKMKKKYYSWEECVNLREVKSLRKMNHPNIVKLKEVIRESDILYFVFEYMECNLYQLMKDREKLFSEGEVRNWCFQAFQGLAYMHQRGYFHRDLKPENLLVTKDIIKIADFGLAREITSQPPYTEYVSTRWYRAPEVLLQSYMYTSKVDMWAMGAIMAELFSLRPLFPGVSEADEIYKICGVIGNPTHESWDDGLKLARDINYQFPQLAGVHLSALIPSASDDAISLIKSLCSWDPCKRPTASEALQHPFFQSCFYIPPSLRSRAVARTPPSAGTRGALDHQGVKRYSGVLSNSKTTNNFSSQKLHPPLASGVQRKLDMVNQDGIKNEKPMRSTKPKYRQPGKDSPTFTNKGRYERGVSEAAEKLGNLSVSTRRQSMGHPRPPPMKAGVNWMSETGNFILGSAQQIQTGRTFTRKVAG 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01009 603 CDD STKc_MAK_like 157 436 - -
Vian10g01009 603 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 155 483 - -
Vian10g01009 603 Gene3D Phosphorylase Kinase; domain 1 147 236 - -
Vian10g01009 603 SMART serkin_6 157 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01009 603 MobiDBLite consensus disorder prediction 506 524 - -
Vian10g01009 603 ProSiteProfiles Protein kinase domain profile. 157 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01009 603 MobiDBLite consensus disorder prediction 476 540 - -
Vian10g01009 603 ProSitePatterns Protein kinases ATP-binding region signature. 163 187 IPR017441 GO:0005524
Vian10g01009 603 SUPERFAMILY Protein kinase-like (PK-like) 152 440 IPR011009 -
Vian10g01009 603 MobiDBLite consensus disorder prediction 476 493 - -
Vian10g01009 603 Gene3D Transferase(Phosphotransferase) domain 1 237 440 - -
Vian10g01009 603 FunFam cyclin-dependent kinase F-4-like 154 236 - -
Vian10g01009 603 Pfam Protein kinase domain 157 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g01009 603 FunFam serine/threonine-protein kinase MAK isoform X1 237 446 - -
Vian10g01009 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01009 Vian-Chr10 11061339 11068544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01009 154 443 Core Cell Cycle Gene Families AT3G48750 37.584 1.49e-64 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Vian10g01009 Pkinase 5.7e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01009 K08829 - gmx:100810150 848.195