Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01007 ATGGCTGACGCTTTGCTGGGAATTGTGTTTCAAGACTTGCAATCTGTTGTTCAAAGCCAACTTGCAACCTATTGGGGTATTGATCAACAGGCACAGAAACTTTCCAGCAATCTTACGGCAATTCGTGCTGTCCTCAGAGATGCTGAGAGAAAGCAAATAGCAAGCCATGCAGTGAAGGATTGGCTGCAGAAACTCACAGATGCAGCATATGTGCTTGACGATATATTGGATGAATGTTCGATTCACTCCAGAGAGGTGCTGTCTGATGATGGACATACTTCATGCTTAGCCCGTGCACATCCTAAGGACATTCTCTTCCGTTTTCATATTGGAAAGAGGATGAAAAATATCACCCAAAGATTTCACGACATCAATGAAGAAAGACGCATGTTTGAATTACGAGTTGGTGTCACAGAGAAGCCAACAGTAGATGATGGTGAGGATTATCAAACTACCTCTGTCATAACCGAACCCATATTCTGTGGCAGAGACGAGGATCGAGAGAAAGTCGTGAAGCTTCTCCTAGAAGCTAATAACAATGAAGACCTCACCATCTATTCCATCGTTGGTATGGGTGGACTTGGCAAAACAACTCTTGCCAAACATGTCTTCCATGACCACAGGGTATGCGAAAATTTTGACTTGACAATTTGGGTGTATGTTTCTGTTGATTTCAATGTGAAGGCAATACTGCAATCCATCATAGAGTATGCCACCGGACAAAACCCCAATCTCCATACTTTAGAAACAATGCGGAAAAAGGTTGAAGAAGTGTTGCACAGCAAGAGATATTTACTTGTTCTTGATGATGTGTGGAATGAAGACCAAGAGAAATGGAAACATTTGGAGGGGATGTTGCGGTTTGCAAGGGGAGCAAAAGGAGCTACCGTTTTGGTCACAACTCGACTCGAGGAAGTTGCTTCCACCATGGAGACGCATCCAGCTTACCATTTGACAGAATTGTCAGTAGATGACAGTTGGTCATTGTTCAAAAGCTATGCGTTTGGACCAAACAGAGAAGAGAAGAAAGAGCTTGTGGCAATCGGTAAAGACATTGTGAAAAAATGCGTTGGTTCGCCGCTTGCAATCAAAACATTGGGAAGTCTATTGCGTGATCAAACTGCGGTAACACAATGGGAAAATATAAAGGAAAGTGAGATTTGGGATATACGGAGTGAAAGTAGTTCTATGACGGGTAAGGAAAATTCTATCATGCGTGCTTTGAAACTAAGCTATTTTAATTTGGAGTTGTCATTGCGGAGATGCTTTTCTTTCTGCGCAATATTCCCCAAAGGTTTTGAAATTGTCAAGGAAGAACTAATTCATCTCTGGATGGCTAATGGATTTATTAAATCTGAAGGAAATGTAGAAGTGGAGGATATCGCCAATAATGTGTGGAGAAAATTATACCGTAGGTCATTCTTTCAAGAAGCAAAGTCTGACAAGTTTGGTATGATTACAAGTTGTAAGATACATGATCTATTTTACGATCTTGCCAAGTCTATTATGGGTGAAGAGTGTGTGATGGTTGAGGAAGGAAGGTTGACTCAGTTGTCAACTAGAGTTCACCATTTACACTTCTTAAGTTATAATATGTCTGTCGATGTAGCTGCTTTCAAGAAAGTTGAATCTATGCGGACTTTTCTTTTCGGTAATATTAGGCAGTTGCCATCAAACCGTTGTCTGCGAGCATTATGTATAAGATCTTCTATGTTGCCTCCATTGAATGATTTAGCACATTTGAGATACTTGAGTGTGCATGATAGCTCGGTGAGAAACTTGAATGATTCAATTTGTCAACTGTCGAAATTGCAAATATTAAAACTGGAGTCTTGCTTTGATTTTTATGAGATACCTAAAAAGTTAACACAATTACAGGATCTAAGACATATTTTGATTAATAAGTGTGCTTCAATACCAGATATGCCTCCGAATATTGGGAAGTTAAGGCATCTAAGAACATTAAGCCTTTTCGACGCGGGTTCAACACCTGGGTATGGGTTGACAGAGTTGAGTGGCTTAAGGCTGGGAGGCAAGCTGCATATCAGAGGACTTGGGAATGTGAGCAACGAATGGGAGGCTAAAGAAGCAAATTTGAGGAGCAAGAAGGAGTTGAATCGCCTATACTTGTCATGGGGTGGTGGTGCTATTTCAGAAGGTAATAATGTTAGTGCAGAGAGAGTATTGGAAGCCTTGGAACCTCCCTCAACTCTGAAGGGTTTTGGGATGGAAGGATATCAGGGAAGAAAGTTACCGAGTTGGATGAGAAGTGTTGTAGTTCTGAAAGACTTGGTGGAAATTATACTCTTTGACTGTAACAACTGTGAGGAGCTTCCTCCACTTGGTAAACTACCACACTTGAAAAAGGTACACGTGCGTGGAATGAAAAATGTGAAGTGGATAGATGGTGAGTCGTATGAAGGTGTGGAGGAGAAGGCATTTCCATCGTTGAGTGTAGAGAATTTACCAAAGTTGGAAAGGATGTTGAGGGATGAAGGAGTAGAGATGGTCCCCCATCTTTCCCAATTAACAATTGATGGTGTCTTCAACTTTAAAGTCCCACATCTTCCTTGTGTTGAGGAGCTTCATGCTAGAAGAGTTGTAGCAGCGACTTCCTTCATTGAAGGGGTTGGGGATAACATGGTTTGTCTAAAGACTCTGGGTGTTAGCTTGATTAAAGGAGTGAAGGTACTACCGGACCAACTGAGGAGGCTGGGTGCCCTGGAGTACCTTCACATTGGATTTTGGTATGATTTGGAGCATTTTCCAGAACATGTATCGGAAGGTTTGACCTCTCTTCGAAGTTTGAGCATTTCCAACTGGAACTTAAAATCCTTGCCTGAAGGTGTGCGACATTTGACATGTCTTCGGCGTTTGAGTATCAGAAATTGTCCAGAGCTGGTAGCTCTACCAAGCAATATAAGCAAACTAACTTCCCTTCTGGATGTCTCAATCGATTATTGCCCTACATTACCATATGGCTTACAACGTGTGCCTTCTCTACGAACTTTGGATATAATATTTTGCAAATGTACTTCATTACCGGACTGGCTGGGAGACATGACTTCTCTTCAAGAATTATTCATTTTGGATTGTGGGGAGTTGAGGTCACTGCCGAGTAGCATTCAACGCCTCACCAACTTGTCTTATTTGAGTATACACGGATGTCCTCATCTGAGGAAGCGGTGCAAGAGGGAAACAGGAGATGATTGGCAATACATAAACCACATTCCAGAAATAGAACTGGACTCCTACTCACTCCCAGAGGAAAAGTCTTTAACATTAAGTGGTGAGAGTATCCGCCGATTATCTTGCTCATGGAACTGCTTCAAGACTGCAAGACAGCCTGCCAAAGGAGTGGTAAGCAGCAATTCATTTGATCGTGTACTTGAAGAGTGA 3399 0.4187 MADALLGIVFQDLQSVVQSQLATYWGIDQQAQKLSSNLTAIRAVLRDAERKQIASHAVKDWLQKLTDAAYVLDDILDECSIHSREVLSDDGHTSCLARAHPKDILFRFHIGKRMKNITQRFHDINEERRMFELRVGVTEKPTVDDGEDYQTTSVITEPIFCGRDEDREKVVKLLLEANNNEDLTIYSIVGMGGLGKTTLAKHVFHDHRVCENFDLTIWVYVSVDFNVKAILQSIIEYATGQNPNLHTLETMRKKVEEVLHSKRYLLVLDDVWNEDQEKWKHLEGMLRFARGAKGATVLVTTRLEEVASTMETHPAYHLTELSVDDSWSLFKSYAFGPNREEKKELVAIGKDIVKKCVGSPLAIKTLGSLLRDQTAVTQWENIKESEIWDIRSESSSMTGKENSIMRALKLSYFNLELSLRRCFSFCAIFPKGFEIVKEELIHLWMANGFIKSEGNVEVEDIANNVWRKLYRRSFFQEAKSDKFGMITSCKIHDLFYDLAKSIMGEECVMVEEGRLTQLSTRVHHLHFLSYNMSVDVAAFKKVESMRTFLFGNIRQLPSNRCLRALCIRSSMLPPLNDLAHLRYLSVHDSSVRNLNDSICQLSKLQILKLESCFDFYEIPKKLTQLQDLRHILINKCASIPDMPPNIGKLRHLRTLSLFDAGSTPGYGLTELSGLRLGGKLHIRGLGNVSNEWEAKEANLRSKKELNRLYLSWGGGAISEGNNVSAERVLEALEPPSTLKGFGMEGYQGRKLPSWMRSVVVLKDLVEIILFDCNNCEELPPLGKLPHLKKVHVRGMKNVKWIDGESYEGVEEKAFPSLSVENLPKLERMLRDEGVEMVPHLSQLTIDGVFNFKVPHLPCVEELHARRVVAATSFIEGVGDNMVCLKTLGVSLIKGVKVLPDQLRRLGALEYLHIGFWYDLEHFPEHVSEGLTSLRSLSISNWNLKSLPEGVRHLTCLRRLSIRNCPELVALPSNISKLTSLLDVSIDYCPTLPYGLQRVPSLRTLDIIFCKCTSLPDWLGDMTSLQELFILDCGELRSLPSSIQRLTNLSYLSIHGCPHLRKRCKRETGDDWQYINHIPEIELDSYSLPEEKSLTLSGESIRRLSCSWNCFKTARQPAKGVVSSNSFDRVLEE 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01007 1132 CDD RX-CC_like 2 126 IPR038005 -
Vian10g01007 1132 Gene3D Ribonuclease Inhibitor 850 1069 IPR032675 -
Vian10g01007 1132 FunFam Probable disease resistance protein At1g61300 145 315 - -
Vian10g01007 1132 Gene3D - 320 416 IPR042197 -
Vian10g01007 1132 Gene3D - 145 315 IPR027417 -
Vian10g01007 1132 SUPERFAMILY RNI-like 881 1110 - -
Vian10g01007 1132 SUPERFAMILY L domain-like 490 801 - -
Vian10g01007 1132 Gene3D Ribonuclease Inhibitor 537 847 IPR032675 -
Vian10g01007 1132 Pfam Rx N-terminal domain 6 84 IPR041118 -
Vian10g01007 1132 PANTHER DISEASE RESISTANCE PROTEIN RP 34 821 IPR044974 GO:0006952
Vian10g01007 1132 Coils Coil 31 51 - -
Vian10g01007 1132 PRINTS Disease resistance protein signature 356 370 - -
Vian10g01007 1132 PRINTS Disease resistance protein signature 599 615 - -
Vian10g01007 1132 PRINTS Disease resistance protein signature 185 200 - -
Vian10g01007 1132 PRINTS Disease resistance protein signature 258 272 - -
Vian10g01007 1132 FunFam Probable disease resistance protein At1g63360 412 501 - -
Vian10g01007 1132 Gene3D - 418 501 IPR036388 -
Vian10g01007 1132 Pfam NB-ARC domain 165 412 IPR002182 GO:0043531
Vian10g01007 1132 Gene3D - 6 124 - -
Vian10g01007 1132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 426 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01007 Vian-Chr10 11023775 11027255 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01007 182 745 WRKY Transcription Factor Family AT5G45050 22.880 1.05e-09 61.2