Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01005 ATGGCAGAAGCTTTGCTAGGAATTGTGCTTGAAAATTTGGGATCTTTTCTTCAAGACCAACTTGCAACTTATTGGGGTGTTGATCAACATGCTCATAAACTTTCCAGCAACCTCACCACAATCCGTGCTGTCCTCAGAGATGCTGAGAGAAAGCAAATAACAAGTCATGCTGTGAAGGATTGGCTGCAGAAACTCACAGATGCAGCATACGTGCTTGATGATATCTTGGATGAGTGTTCAGTTCAATCCAAAACACTGCACTCTGTTGATGGTCATACTTCACGCCTATCCCATCTCCATCCTAAGGACATTATCTTTCGCTTTCGTATTGGGAAGAGGATGAAAGACATCACTCAAAGGTTTCATGACATTCATGAAGAAAGGCTCACATTTGAATTGCGTGTGGGCGTCACGGAGAAGCAAGCAGTGAATGATGATGATGATGATTGGCGTCAAACTAGCTCAGTGATTACCGAACCAATATTCTGTGGCAGAGACAAGGATCGAGAGAAAATTGTAAAGTTTCTGTTGGAAGATGCTAGTAACAGTGAAGAACTCAGCATCTATCCCATAGTTGGTATGGGTGGACTTGGCAAAACAACTCTTGCCAAGCGGGTCTTCAATGATCACGAGATAAGTAAACATTTTGACTTGAGAATTTGGATCTGCGTTTCGGATGATTTCAATGTGAAGAGAATACTGCAATCCATTATAGAATGTAGCATTGGTCAAAATCCCAACCTCGGTAATTTAGAAGCAAGGCGAAAAAGGGTTGAAGAAGCATTGCAAAGCAAGAGGTATTTACTTTTTCTTGATGATGTGTGGAATGAAGACCGAGAGAAGTGGAAGGAGTTGAAGGGGATGTTGGAGTGGGCGAAGGGAGCAAAAGGAGCTACGATTTTGGTCACCACTCGACTTCAGGAAGTTGCCTCCATCATGGGGACGCATCCTGCTTACAGTTTGACAGCATTGTCAGAAGACGACAGTTGGTCATTGTTCAAACACCATGCGTTTGGACTAAACAGAGAAAAAAGGGAAGAACTTGTGGCAATTGGTAAAGAAATAGTAAGGAAATGCGTTGGTTCGCCACTTGCAATCAAAACACTGGGAAGCTGTTTGCGTGATGTAAGTGAATTAAAGCAGTGGCAGAATATAAAGGAAAGTGAGATTTGGAATATACGGGAGGTAAGTAGTTCTCTGATAAGTGACGAAAATTCTATCATGCGTGCCTTGAAATTAAGCTATTTTAATTTGGAATGGTCATTGCGGAGATGCTTTTCTTTCTGTGCAATTTTCCCTAAAGATTTTGAAATTGATAAAGAAGAACTCATTCATCTTTGGATGGCAAATGGATTTATTAAACAGGAAGGGAATGTAGAGGTGGAGGATGTTGGTAATAAAGTGTGGAAAAGATTATACGATAGATCATTCTTTCAAGAAGCAAAGGCCAATAGGATTGGTATGATTAAAACTTTCAAGATTCACGATCTCTTCCATGATCTTGCTCAGTCTATTATGGGCGAAGAATGTGTGATTTACGGGGAAAGAAAGTTGACTCGATTGCCAAATAGAGTTCACTATTTACGATTGTTAAATTCTAATTATTTTGTCGATATGGATGCCTTCAAGAAAGTTGAATCATTTCGAACTGTAATTGATTTTGGTCAAGGATTGCATTGTGTAAATATTGGTTTGTTGCCATCAAATCATTGTCTCCGAGCATTACACATAAGATCTTCTCTTTTCTCCCCACTGAATAATTTATCACATTTGAGATATTTGAGTTTGGACATGTGTTCAGTATTGCATAATTCTATTTGTGGGTTGCAGAAATTGCAAATACTGAAACTCGAATATTGTGGAGGGTTGCATAATTTTTTTCCAGAAAACATGACACAATTACAGGATCTTAGGCATCTTGTGATTAATAAATGTCCTTCAATAGCAGAGATGCCTCGGAATATTGGCAAGTTAAGGCATCTAAGAACATTGAACACGTTCGTCGTGGGTTCAAAACTGGAGTATGGGTTGGCAGAGTTACATGGCTTAAGTCTGGTTGGAAAACTGCATATCAGAGGCCTTGAGAATGTGAGCAATGAATGGGAGGCTAAAGAAGCAAATTTGATGAGCAAGAAGGAGTTGAATCGCCTATACTTATCATGGGGTGGTAGAGCTAACTCACAAGGTAGTAATGTTAGTGTGGAGAGAGTCCTGGAAGACCTGGAACCTCCCTCAACTCTGAAGAGTTTTGGGATGCAAGGATATCAGGGAAGAAAGTTATCGAGTTGGATGAGAAGTGTTGTAGTTCTTAAAGACTTGGTGGAAGTTATACTCGTGGACTGTAAGAACTGTGAGGAGCTTCCTCCACTTGGAAAACTACCACACTTGAAAAAGATAGACGTGCGTGGAATGAAAAATGTGAAGTGGATAGATGGTGAGTCGTATGAAGAAGGTGTGGAGGAGAAGGCATTTCCATCGTTGGAGAAACTGAGTGTAGAGAATTTACCAAATTTGGAGAGGTTGTTGAGGGATGAAGGAGTAGAAATGGTCCCTCGTCTTTCCCAATTAAGAATTGATGGTGTCTTGAACTTTGAAGTCCCACATCTTCCGTGTGTTGAGGAGCTTGATGCTAGAGGAATTAAGGCAGCGACTTCTTTCATGGAAGGGGTTGCGGAGAATATGACATGCCTGAAGAGCTTGCGAATTGCATTCATGAAAGATTTGAAGGTACTGCCCGACAAACTGAGCAGTCTGAGTGCACTACAGAAACTAGAGATATTGGGATGTGAGGAGTTGAGGTCACTGCCAAATAGCTTTCAACGCCTCACCAACTTGTCTAAATTAAGTATTTTCAATTGTCCTTGGCTGATGGAGAGATACAGAAGGGAAACAGGAAATGATTTGCAACTCATAGCTCACATTCCAAATATAGAATTGGAATACATCCTCGCATTCGAAGAGACAGAGGCTTTACCATTTAGTGTAGAAAGTTGGCCGCGATCATCTTGCTCATGGAACTGCTTCAAGGCTACAAGACCGCCTGCCAAAATAGAAAAATTTTATTTTGACTACATGGATGAGTATGAATGA 3090 0.4068 MAEALLGIVLENLGSFLQDQLATYWGVDQHAHKLSSNLTTIRAVLRDAERKQITSHAVKDWLQKLTDAAYVLDDILDECSVQSKTLHSVDGHTSRLSHLHPKDIIFRFRIGKRMKDITQRFHDIHEERLTFELRVGVTEKQAVNDDDDDWRQTSSVITEPIFCGRDKDREKIVKFLLEDASNSEELSIYPIVGMGGLGKTTLAKRVFNDHEISKHFDLRIWICVSDDFNVKRILQSIIECSIGQNPNLGNLEARRKRVEEALQSKRYLLFLDDVWNEDREKWKELKGMLEWAKGAKGATILVTTRLQEVASIMGTHPAYSLTALSEDDSWSLFKHHAFGLNREKREELVAIGKEIVRKCVGSPLAIKTLGSCLRDVSELKQWQNIKESEIWNIREVSSSLISDENSIMRALKLSYFNLEWSLRRCFSFCAIFPKDFEIDKEELIHLWMANGFIKQEGNVEVEDVGNKVWKRLYDRSFFQEAKANRIGMIKTFKIHDLFHDLAQSIMGEECVIYGERKLTRLPNRVHYLRLLNSNYFVDMDAFKKVESFRTVIDFGQGLHCVNIGLLPSNHCLRALHIRSSLFSPLNNLSHLRYLSLDMCSVLHNSICGLQKLQILKLEYCGGLHNFFPENMTQLQDLRHLVINKCPSIAEMPRNIGKLRHLRTLNTFVVGSKLEYGLAELHGLSLVGKLHIRGLENVSNEWEAKEANLMSKKELNRLYLSWGGRANSQGSNVSVERVLEDLEPPSTLKSFGMQGYQGRKLSSWMRSVVVLKDLVEVILVDCKNCEELPPLGKLPHLKKIDVRGMKNVKWIDGESYEEGVEEKAFPSLEKLSVENLPNLERLLRDEGVEMVPRLSQLRIDGVLNFEVPHLPCVEELDARGIKAATSFMEGVAENMTCLKSLRIAFMKDLKVLPDKLSSLSALQKLEILGCEELRSLPNSFQRLTNLSKLSIFNCPWLMERYRRETGNDLQLIAHIPNIELEYILAFEETEALPFSVESWPRSSCSWNCFKATRPPAKIEKFYFDYMDEYE 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01005 1029 PRINTS Disease resistance protein signature 188 203 - -
Vian10g01005 1029 PRINTS Disease resistance protein signature 586 602 - -
Vian10g01005 1029 PRINTS Disease resistance protein signature 359 373 - -
Vian10g01005 1029 PRINTS Disease resistance protein signature 261 275 - -
Vian10g01005 1029 Pfam Rx N-terminal domain 6 87 IPR041118 -
Vian10g01005 1029 Gene3D Ribonuclease Inhibitor 862 963 IPR032675 -
Vian10g01005 1029 SUPERFAMILY L domain-like 483 958 - -
Vian10g01005 1029 Gene3D - 323 419 IPR042197 -
Vian10g01005 1029 Pfam NB-ARC domain 166 415 IPR002182 GO:0043531
Vian10g01005 1029 CDD RX-CC_like 2 124 IPR038005 -
Vian10g01005 1029 PANTHER DISEASE RESISTANCE PROTEIN RP 37 832 IPR044974 GO:0006952
Vian10g01005 1029 Gene3D - 6 120 - -
Vian10g01005 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 429 IPR027417 -
Vian10g01005 1029 Gene3D Ribonuclease Inhibitor 516 861 IPR032675 -
Vian10g01005 1029 Gene3D - 421 504 IPR036388 -
Vian10g01005 1029 FunFam Probable disease resistance protein At1g61300 145 318 - -
Vian10g01005 1029 Gene3D - 147 317 IPR027417 -
Vian10g01005 1029 FunFam Probable disease resistance protein At1g63360 415 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01005 Vian-Chr10 10982197 10985286 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01005 191 665 WRKY Transcription Factor Family AT5G45050 23.137 1.19e-08 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01005 - - vum:124833357 2001.1