Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01002 ATGGCTGGGTCACTGACGCCAGGGGCGATAAAAGAAATATGCGGTGCCAATTGTTCCAGTAGTTTAAAACCAGTATTGCAAGTTATAGATTTGAAGCTGGTGCAGTCGCAACAAGCCAACAACACCGAGAGGTACCGGTTGATTCTTTCTGACGGTTCCTTTTACCAGCAAGGCATGCTCGCCACGCAGATGAACGAACTAGTTCATTCTGGAAAGTTGCAGAAAGGTTCCGTCGTTAGGCTCACACAGTTCATCTGCAACGATGTCCAGAACCGCAACGGTTGGTTGCTGTTCTTGATATCGTGGAAGAATCCTGAATGCCAATTGTGGGTGAGTTGCTGTGCTGTTGCAGAACCTAAAAATCTTGACGTTGCAAGCTGTTTTAACATGCGTGCTTGTTTGTTCGTGATTGCTTTTGTTGGTTTTTATGATTGTAAACTAGTTGAGTGCTTTACTGCTCAGATTATTGTCATAATTGACCTAGATGTTGTAGTGGAAAAATGTGAGTTGATTGGAGAACCTGTCTCCTTACCAAAAGATGGATCTGTAGAATCTGCTACTGGTCAATCAGGAGTCACCCCTGGAAATTCACAATCTTTGAATAACCGTTCACACTCAGGCGGCATGGCTGCTAGACCGAATATGGCCATACCATCTCCAGATCATCCAAGAATGAATGCTCCTGCCAGTAGTGTTTATTCTAGTATTTCCAACTCTGGATCTAGTTATTCTAGTAATGCACCTCCTACATATCCTAAAGTAGAAACCGGAGCTAATTTGTCTAGATCAGCACCATTTACTGGATCTCATGGTGATCAGAACATGGGTATTCGTCATCCCCAATCTGAGACTTCAAGGCCCTTGTCAAACTCTTATGCTCGTGCACCTCAGCCTATGTATCGGCAACCATCTCCAATGTACACTAACAGAGGGCCAATTGGAAAAAATGAAGCTGCCCCCAGGATAATTCCAATAGCAGCATTGAATCCTTACCAGAATATGTGGACGATCAAAGCCAGGGTAACAGCTAAAGGAGAACTCAGGCACTATAACAATGCTCGAGGTGATGGCAAGGTGTTTTCATTTGACCTTTTGGATTCTGATGGTGGGCAAATTCGGGCAACTTGCTTCAATAGTGTGGCTGATCAGTTCTATAATTTGATTGAAGCTGGTAAGATATACCTAGTTTCCAGGGGAAGCGTAAAGCCAGCTCAGAAGAATTTCAATCACCTTCCCAATGATCAAGAGTTAACCCTTGATATGACATCCATCATACAACCATGCCCTGATGATGATAAATCAATTCCAAAGCAGACTTTTAATTTTCGGCCCATTAGTGAAATTGAAAGTTTGGAAAGCAACGCCATTGTGGATATGATTGGTGTGGTGACTTCAATTAGTCCTACAGCTTCAATCATGAGAAAAAATGGTACTGAAACTCAGAAGAGAACACTCCAGTTGAAAGACATGTCTGGTCGAAGTGTTGAGTTAACTTTGTGGGGAAATTTTTGCAACGTGGAAGGACAAAGGCTGCAAACTATTTGCGATGATGGTAAATTTCCAGTTTTGGCTATAAAAGCTGTCAGAATTAACGATTTCAATGGAAAGTCTGTTGGGACTATAATGACTAGCCTACTGTTCATAGAGCCTGATTTTCCAGAGGTTTACACACTGAAAAGATGGTTTGAAAAGGAAGGGAAGAATGTCCCAACTCTCTCTATCTCTAAAGATACATCTAGTTTTCCTAAGAATGATAATCGGAAGACTGTATCTCAAATTAAAGACGAGAAGTTAGGGACTTCGGAAAAGCCTGATTGGATATCTGTCTGTGCAACTATTTCATTCATGAAGTATGATAACTTCTGTTACCCAGGATGTCCTATCATGATAGGGGATAGGCAATGTAACAAAAAAGTGACTAATAATGGTGATGGAAAATGGATTTGTGATAGGTGTAACCAATCTGTTGACGCTTGTGATTATAGGTACATACTGTCATTCCAGATAATGGATCACACAGGTGTAACATGGGTTACTGCTTTCCAGGAGAGCGGTGAGGAGATCATTGGCGTGCCTGCAAAAGATTTGTATTATCTGAAGTATGAAGAGCAAAATGATGAAAGATTTGCTGAAATCATCCGGAAGGTTCTCTTCTCCGAGTATGTTTTCAAGTTGAAAGTAAAAGAGGAAACATTCAGTGATGAACAACGTGTTAAGGCAACTGTGGTTAAAGCAGAAAAGGTAAACTTTGCATCTAAATCCAGAGTTAGTTTGGAATTGATTGATAAACTCTTGACTGGGAAATCAGAAGGTGCTACCACCGTTACCAACTCATTATCCGGTAATACTGGACTGAGGAGTGTTGAAACTGGTCAAGTAATGCCACCGGCTTATAACCCAATAAAGAGTAGCACTAATAGCGGTAGAGATTTTGGGATGCCAGCAAATCAAGTGGGTCAACAATATGGAAACCAATATGGCAATATTGCTTCAGCAGGTGCTCCTGGTGCATATACATCATGTACCAACTGTGGAGGTTCTGGTCATACTTCTATACTTTGCCCAAATGTTAGAAATCCGGCTGGACAGTCTTCAGGAGGGGGCTTTTCCAACAGGGTATCATATGGTGGATCAGGTGGTGGTGCTTCTGGTGAATGCTTTAAATGCCATCAACCTGGCCACTGGGCAAGAGACTGTCCTGGTTCCAGTGCAGCAACTGCATCATATGGAAGCAATACAATGCAGGGAAGATATGGAGGATATTGA 2766 0.4201 MAGSLTPGAIKEICGANCSSSLKPVLQVIDLKLVQSQQANNTERYRLILSDGSFYQQGMLATQMNELVHSGKLQKGSVVRLTQFICNDVQNRNGWLLFLISWKNPECQLWVSCCAVAEPKNLDVASCFNMRACLFVIAFVGFYDCKLVECFTAQIIVIIDLDVVVEKCELIGEPVSLPKDGSVESATGQSGVTPGNSQSLNNRSHSGGMAARPNMAIPSPDHPRMNAPASSVYSSISNSGSSYSSNAPPTYPKVETGANLSRSAPFTGSHGDQNMGIRHPQSETSRPLSNSYARAPQPMYRQPSPMYTNRGPIGKNEAAPRIIPIAALNPYQNMWTIKARVTAKGELRHYNNARGDGKVFSFDLLDSDGGQIRATCFNSVADQFYNLIEAGKIYLVSRGSVKPAQKNFNHLPNDQELTLDMTSIIQPCPDDDKSIPKQTFNFRPISEIESLESNAIVDMIGVVTSISPTASIMRKNGTETQKRTLQLKDMSGRSVELTLWGNFCNVEGQRLQTICDDGKFPVLAIKAVRINDFNGKSVGTIMTSLLFIEPDFPEVYTLKRWFEKEGKNVPTLSISKDTSSFPKNDNRKTVSQIKDEKLGTSEKPDWISVCATISFMKYDNFCYPGCPIMIGDRQCNKKVTNNGDGKWICDRCNQSVDACDYRYILSFQIMDHTGVTWVTAFQESGEEIIGVPAKDLYYLKYEEQNDERFAEIIRKVLFSEYVFKLKVKEETFSDEQRVKATVVKAEKVNFASKSRVSLELIDKLLTGKSEGATTVTNSLSGNTGLRSVETGQVMPPAYNPIKSSTNSGRDFGMPANQVGQQYGNQYGNIASAGAPGAYTSCTNCGGSGHTSILCPNVRNPAGQSSGGGFSNRVSYGGSGGGASGECFKCHQPGHWARDCPGSSAATASYGSNTMQGRYGGY 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01002 921 NCBIfam replication factor-a protein 1 (rpa1) 281 762 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vian10g01002 921 CDD RPA1_DBD_C 590 763 IPR047192 -
Vian10g01002 921 SUPERFAMILY Nucleic acid-binding proteins 1 92 IPR012340 -
Vian10g01002 921 SUPERFAMILY Nucleic acid-binding proteins 586 765 IPR012340 -
Vian10g01002 921 CDD RPA1N 8 93 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vian10g01002 921 FunFam Replication protein A subunit 434 572 - -
Vian10g01002 921 SUPERFAMILY Retrovirus zinc finger-like domains 870 902 IPR036875 GO:0003676|GO:0008270
Vian10g01002 921 Gene3D - 837 909 - -
Vian10g01002 921 SMART c2hcfinal6 885 901 IPR001878 GO:0003676|GO:0008270
Vian10g01002 921 SMART c2hcfinal6 840 856 IPR001878 GO:0003676|GO:0008270
Vian10g01002 921 Pfam OB-fold nucleic acid binding domain 335 422 IPR004365 GO:0003676
Vian10g01002 921 Gene3D - 573 764 IPR012340 -
Vian10g01002 921 MobiDBLite consensus disorder prediction 776 797 - -
Vian10g01002 921 SUPERFAMILY Nucleic acid-binding proteins 322 434 IPR012340 -
Vian10g01002 921 Pfam Replication protein A OB domain 445 548 IPR031657 -
Vian10g01002 921 Pfam Replication factor-A C terminal domain 606 755 IPR013955 -
Vian10g01002 921 Pfam Replication factor-A protein 1, N-terminal domain 5 92 IPR007199 GO:0003677|GO:0005634|GO:0006260
Vian10g01002 921 SUPERFAMILY Nucleic acid-binding proteins 440 569 IPR012340 -
Vian10g01002 921 FunFam Replication protein A subunit 573 764 - -
Vian10g01002 921 MobiDBLite consensus disorder prediction 228 297 - -
Vian10g01002 921 MobiDBLite consensus disorder prediction 182 208 - -
Vian10g01002 921 MobiDBLite consensus disorder prediction 181 313 - -
Vian10g01002 921 Gene3D - 321 431 IPR012340 -
Vian10g01002 921 Gene3D - 3 178 IPR012340 -
Vian10g01002 921 FunFam Replication protein A subunit 4 100 - -
Vian10g01002 921 ProSiteProfiles Zinc finger CCHC-type profile. 886 900 IPR001878 GO:0003676|GO:0008270
Vian10g01002 921 Gene3D - 434 572 IPR012340 -
Vian10g01002 921 CDD RPA1_DBD_A 324 426 - -
Vian10g01002 921 CDD RPA1_DBD_B 456 563 - -
Vian10g01002 921 PANTHER REPLICATION FACTOR A 1, RFA1 335 755 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vian10g01002 921 Pfam Zinc knuckle 885 900 IPR001878 GO:0003676|GO:0008270
Vian10g01002 921 FunFam Replication protein A subunit 321 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01002 Vian-Chr10 10895441 10898670 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01002 143 867 Core DNA Replication Machinery Family AT5G45400 51.145 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01002 K07466 - gmx:100778597 1159.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01002 10 10895441 10898670 Vian10g01002 10 10895441 10898670 ECH