Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00998 ATGGGGTCTACTGAGCATGGGAGAGTATCAGTTAGGGAGTTCCAGGCCAATGGAAGCCGCATGGCTGCATCAGAAGTTGAGGCCAAGCTTGATCAAGGAAATATTCAAGAAGCAGAAGATTCGTTGCGAGAAGGATTGTCACTCAATTTTGAGGAAGCAAGAGCTCTTCTTGGTAAGTTGGAGTATCAGAGAGGTAATGTAGAAGGTGCTCTTCGTGTGTTTGATGGGATTGATCTCCAAGCTGCCATTCAGAGGTTGCAATCTTCATTTTCTGAGAAACCACCAGGCAAGAAAGGTCGTGCTCACACTGAATCAGCCTCGGGCTCTCAGCATGCGGCTAGCTTGGTGCTTGAAGCCATCTACTTAAAAGCCAAGTCTCTGCAAAAATTAGAGAAATTTACAGAGGCTGCTAATAATTGTAAACGTATTCTTGATTCCGTTGAGAAGATATTTTATCAGGGTATTCCTAATATTCAAGTGGATAATAAATTGCAAGAGATAGTCAGCCATGCTGTAGAGCTCCTTCCAGAGCTTTGGAAGCAAGCTGGTTGCTATGATGAGGCAATCTCTGCTTATAGGCGAGCCCTTTTTAGTCAATGGAACCTTGATAATGATTACTGTGCAAGAATTCAGAAGTCGTTTGTTATGTTTTTGCTATACAGTGGGGTGGAGGCAAGTCCACCTAGTTTGGCAGTTCAGATTGAAGGGTCATATGTGCCTAAAAATAATCTTGAAGAGGCTATTCTGCTATTGATGGTTCTTTTGAGAAAGTTTAGCCTTGGTAAGATGAAATGGGATCCATCAGTCATGGAACACCTTACTTTTGCACTTTCTATATGTAGCCAAACTTCTACTTTAGCAAAGCAAATTGAAGAGTTGATGCCTGGAGTATACCATCGAATCGATTGTTGGAATTCTTTAGCTTTTTGTTATAGTGGTGCTGGACAAAATGACTGTGCTTTGAGCCTGCTAAGGAAATCTTTGCACAAACATGAACGACCAAATGACATTACATCATTAGTGTTAGCAGCTCGGATCTGCAGCTCAGATCCCCATCTTGCTGCTGAGGGAGTGATCTATGCACAGAGGGCAGTCAATAATGCTCGTGACCAAAATGAACATTTGAAAGGTGTTGCTCTACGGATGTTGGGACTTTGTCTTGGAAAGCAATCTAAGGTTGCTTCCTCTGACTCTGAGAGGTCTCGCCTTCACTCCAAAGCTTTAGAGTCATTGGTGGCAGCAATCAAATTGGAGCCAAACAATTCTGATCTGATTTTTGAATTGGCTGTTCATTATGCGCAACACCGAAACTTGTCTGCTGCTTTGCGCTCTGCGAGACATTTCTTTAATCAAACAGGTGGTTCTATGTTGAAATCTTGGAGATTGCTTGCTCTAATTTTGTCTGCACAGCAAAGATTTTCTGAAGCTGAAGTGGTGACAGATGCTGCTTTAGATCAGACTGCAAGATGGGAGCAGGGGCCACTGCTTAGGCTGAAAGCAAAGTTGAAGATATCCCAATCACGACCAATGGATGCTATTGAAACCTATAGATACCTTCTTGCATTGGTTCAAGCCCAGAATAAATCCTTTGGGTCTTCCCAAATTAGTTCAAAGGTTCTGGATGATAAAATAAATGAATTTGATATTTGGCATGGTCTGGCAAATTTATATGCTAGTCTCTCTCGTTGGAAGGATGCCGAAATCTGTCTGCAGAAGGCCAGGGAGTTGAAGAAATACTCTGCTGCAGTAATGCACACTCAAGGTGTTTTGTTTGAAGGACGTGGGCAAAATGACGAAGCTTTTCTTGCTACTATTAATGGTTTACTACTTGAAGCAAACCATGTTCCATGCAAGATCTTGATGGGTGGCATGATTCAAAGATTGGGTCCAAAGTTTTTTTGTGCTGCAAGAAGCGCACTGTCTGATGCACTCCGAATAGAACCCACTAACCGCATGGCTTGGCATTGCTTGGGATTGCTTAACAAGCAAGATGGCAGAATAAGTGAAGCCGCTGACTGCTTCCAAGCAGCTTCCATGCTTGAAGAATCTGATCCCATCGAATCTTTCAGCTCTATACTTTGA 2082 0.427 MGSTEHGRVSVREFQANGSRMAASEVEAKLDQGNIQEAEDSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQSSFSEKPPGKKGRAHTESASGSQHAASLVLEAIYLKAKSLQKLEKFTEAANNCKRILDSVEKIFYQGIPNIQVDNKLQEIVSHAVELLPELWKQAGCYDEAISAYRRALFSQWNLDNDYCARIQKSFVMFLLYSGVEASPPSLAVQIEGSYVPKNNLEEAILLLMVLLRKFSLGKMKWDPSVMEHLTFALSICSQTSTLAKQIEELMPGVYHRIDCWNSLAFCYSGAGQNDCALSLLRKSLHKHERPNDITSLVLAARICSSDPHLAAEGVIYAQRAVNNARDQNEHLKGVALRMLGLCLGKQSKVASSDSERSRLHSKALESLVAAIKLEPNNSDLIFELAVHYAQHRNLSAALRSARHFFNQTGGSMLKSWRLLALILSAQQRFSEAEVVTDAALDQTARWEQGPLLRLKAKLKISQSRPMDAIETYRYLLALVQAQNKSFGSSQISSKVLDDKINEFDIWHGLANLYASLSRWKDAEICLQKARELKKYSAAVMHTQGVLFEGRGQNDEAFLATINGLLLEANHVPCKILMGGMIQRLGPKFFCAARSALSDALRIEPTNRMAWHCLGLLNKQDGRISEAADCFQAASMLEESDPIESFSSIL 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00998 693 SUPERFAMILY TPR-like 537 677 IPR011990 GO:0005515
Vian10g00998 693 Gene3D Tetratricopeptide repeat domain 20 206 IPR011990 GO:0005515
Vian10g00998 693 Gene3D Tetratricopeptide repeat domain 237 534 IPR011990 GO:0005515
Vian10g00998 693 Pfam Tetratricopeptide repeat 28 75 - -
Vian10g00998 693 Gene3D - 612 686 - -
Vian10g00998 693 SUPERFAMILY TPR-like 30 201 IPR011990 GO:0005515
Vian10g00998 693 SUPERFAMILY TPR-like 407 517 IPR011990 GO:0005515
Vian10g00998 693 PANTHER PROTEIN NPG1 8 690 IPR043376 -
Vian10g00998 693 Gene3D Tetratricopeptide repeat domain 535 611 IPR011990 GO:0005515
Vian10g00998 693 MobiDBLite consensus disorder prediction 88 107 - -
Vian10g00998 693 SUPERFAMILY TPR-like 117 442 IPR011990 GO:0005515
Vian10g00998 693 SMART tpr_5 377 421 IPR019734 GO:0005515
Vian10g00998 693 SMART tpr_5 581 614 IPR019734 GO:0005515
Vian10g00998 693 SMART tpr_5 117 150 IPR019734 GO:0005515
Vian10g00998 693 SMART tpr_5 651 684 IPR019734 GO:0005515
Vian10g00998 693 SMART tpr_5 547 580 IPR019734 GO:0005515
Vian10g00998 693 SMART tpr_5 457 490 IPR019734 GO:0005515
Vian10g00998 693 SMART tpr_5 301 334 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00998 Vian-Chr10 10819367 10833468 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00998 11 693 Calmodulin-binding Proteins AT2G43040 69.723 0.0 949