Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00987 ATGATGACTCCGTGGTTTTTGGCCGGCCACCTTCACCACCTCTTAACGCTCAACACAGACAAGTCCAACCATTTTTCCTCACTCTGCAATAACTTGGAATTCATGGACGACGACCATGGCCATCGCTTTCTTAACAACTTCGTGATTCTCCTCCTTGCAATGGGTTTATTAGCTTTCTTTTTATCATTGTGCCATCTCATAGCCATTTGCTTCTGGTACCAACGCATCAATCGCCAAAACCCAACGCCGACAGCGACGGCCTCCTCGGCGGTGCAGATGATTCCTACACACACGTACCACAGGAAGACAGTTGATGGTGATGTGGTTTCCGGCGATGGTAATGAAGGTGGGACGTGTGTGGTGTGCTTGGGTGAGTTTGAGGAGGGTGAGGAGCTGAGGACGTTGCCTGAGTGTTTGCACTGTTTCCACGTGGCATGCATTGACACGTGGCTGTGTTCGCATTCGAGTTGCCCCGTTTGCCGGAGCATTGCCACGCCGTCTCTGGATCATGATTTGAACGATGCGCATGAGCACCGCATACATATGACGCAGTTTTCCATTGTACAAAATAGCTTTGTGTTACTAGGGAATTCATTGTGCTTAATGAATCCTGTGACTGCGATGAAAATGAAAAACCAGGTTACCTTGCCTTCAGCCAGTGAGGTTGTGAAACCTAACAAAACTTCTCATATTAGATCTTTTAGCTCAATTCCAGCTGTAAAGAAGGCTTGGGATGCAATTCATAGGAACAAATCAAGCTCCAGGGCACCGTCACCTGACCAGCAAGAGGGTAAAAAGAAATTGGCTAGTGAATCAAATAGATTTACCTATTCTGGTGAATTGCTTCCAGGTAGACTCTCTCCCTTCCGTCGCTCAAGAGCAGTTGCTACTGGTATATCTCCCTCTCAAAGACCTCAATCTCCCTTTCGCGGCGTCAAGTTGCTTAGTGATTCTAGAGAAGCTCAAAATTACAAGTTTGGCAAGGTTAAATTCTACAGCAGTGTGCTTGGAAATGTTCAAGATGTGAAATCCCTGGGAAACAAAAAAAAATCGTATTTAGGTAGTCTCACACTTGAAAAGACATTGTACATAGATACAGTCAGCACAACGAATTTACCATCTTCAAATGTAAGTTCTTTGAATAACAAACGGAGGGTAGATACTATGGTTGCAGACTTAGAGAGAAGAAGGGGGAAAGAAAGTAATTCCTCCATAGGATCTTCTGGAGATATAAAACATGTACAATATGCTGTGGAAGAAAATATCACGTTTGATACTGAAGTTTTAAACTCTTTAGATTCCATTCCATCGAATTTGTATAGAATTTTGAATCTCACAGCCAAAGAAGGAAAAACTGAAGGATTGACAACTGATGAAAATATTAACCAAGGGACATTAGTTGAACAATACCCAGCAAATTGTTTTAGTTAA 1431 0.4312 MMTPWFLAGHLHHLLTLNTDKSNHFSSLCNNLEFMDDDHGHRFLNNFVILLLAMGLLAFFLSLCHLIAICFWYQRINRQNPTPTATASSAVQMIPTHTYHRKTVDGDVVSGDGNEGGTCVVCLGEFEEGEELRTLPECLHCFHVACIDTWLCSHSSCPVCRSIATPSLDHDLNDAHEHRIHMTQFSIVQNSFVLLGNSLCLMNPVTAMKMKNQVTLPSASEVVKPNKTSHIRSFSSIPAVKKAWDAIHRNKSSSRAPSPDQQEGKKKLASESNRFTYSGELLPGRLSPFRRSRAVATGISPSQRPQSPFRGVKLLSDSREAQNYKFGKVKFYSSVLGNVQDVKSLGNKKKSYLGSLTLEKTLYIDTVSTTNLPSSNVSSLNNKRRVDTMVADLERRRGKESNSSIGSSGDIKHVQYAVEENITFDTEVLNSLDSIPSNLYRILNLTAKEGKTEGLTTDENINQGTLVEQYPANCFS 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00987 476 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 166 IPR013083 -
Vian10g00987 476 SMART ring_2 119 160 IPR001841 -
Vian10g00987 476 Pfam Ring finger domain 118 161 IPR001841 -
Vian10g00987 476 Pfam Protein of unknown function (DUF688) 197 379 IPR007789 -
Vian10g00987 476 PANTHER N-METHYLTRANSFERASE, PUTATIVE (DUF688)-RELATED 197 459 - -
Vian10g00987 476 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Vian10g00987 476 MobiDBLite consensus disorder prediction 249 270 - -
Vian10g00987 476 SUPERFAMILY RING/U-box 99 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00987 Vian-Chr10 10761972 10765267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00987 38 163 C3H Transcription Factor Family AT1G20823 38.194 1.65e-21 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00987 - - var:108336104 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00987 10 10761972 10765267 Vian10g00987 10 10761972 10765267 ECH