Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00982 ATGTCTCTTCTCAGCCGATTCTTCTACAAGCGTCCCCCTGATGGCTTACTCGAATTTGCAGACAGAGTCTATGTATTCGATTCCTGCTTCTCCACCGAAGCCCTCCCAGAGGGAATGTACCAGCTCTACCTCCGCCAAATTCTCTCCGACCTCCACGAAGACTTCCCGGAATCTTCCTTCCTCGCACTCAACTTCCGCGACGGTGACTCACGCAGCCGCTTCTCGCGCCTCCTGTGCGAACTCGACGCCACTGTCATCGACTATCCGAAGCAGTACGAGGGCTGCCCCCTCCTCCCCCTCTCCCTCCTCCACCACTTCCTCCGCCTCTGTGACACCTGCCTCGCCGACCCCGCCACCGTGATCTTGTTCCACTGTGAGCGCGGCGGCTGGCCCCTCCTCGCCTTTCTCCTTGCTGCTTTCCTCGTTTTCCGGAAGGCGCAGAGTGGGGAGCGGAAGATTCTGGAGATGGTTCACAGGGAGGCGCCGAAGGGGCTGCTGCAGCTGCTGTCGGCGCTCAACCCGATGCCGTCGCAGCTGCGTTATGTGCAGTATGTGGCTCGGAGGAACATTGGCGCGGAGTGGCCGCCGCCGGAGAGGGCGCTGTCTCTGGACTGTGTAATACTCAGAGGGGTTCCTGGGTTTGATGGGGGGAATGGGTGCAGGCCGTTGTTTAGGATTTTTGGGAGGAATTTGCTTAGTAAAGGCGGCCTTTCCACGCGGATGATTTATAATATGCATAAGAAGAAGAAGACTTTGAGGCACTACAGACAGGCAGACTGTGATGTGATTAAGATTGATATTCAATGCTTAGTGCAAGGGGATGTGGTTTTGGAGTGCGTGCATTTGGATTTGGATCCGGAGAGGGAGGTGATGATGTTTCGAGTGATGTTCAATACAGCATTCATTCGGTCAAACATTTTGATGCTGAATGCTGAGAACTTGGACATTCTGTGGGATTCGAAGGAGCGGTATCCAAAGGGCTTCCGGGCTGAGGTATTGTTTGGGGAGGTTGAAAACATAAGTCCTCAAAGGGCTCCCACAAGTATTTTAGATGGTGAGGTGAAAGGTGGATTACCCATTGAGGCATTTTCAAGGGTTCAAGAACTTTTCAGTGGTGCAGAATGGATTGACAGTGGTGATTCTGCTGCTGTATGGCTTCTTAAGCAGCTTACAGTCTTAAACGACGCCAAAGAGTTTTCAAGGTTTCAGGGTAGAGGAAGTTGGTATTCATCTCCTGCTGACTCTGAAGAAGAAAATAATGAGTCGAGCACTGCTGATAGTTCAGACGAGGCCTTTGATGTTATTCCCAGGTCTTATGCTGATCCTTCAAAATTATTTACATCTGACACACCTGATTTGGTCCATTTAACTTTTGAAAACAACGGTGGAGATTATGTAAATCTAACTTCAAGAACACCTGATCAGTCACTAACCGATGATGTTTCATTGCCTCACCATGCTCTAACTAAGGAAACTTCTCCTTGTTTGTCTCCACCGTCACCTTCACATTTTCCCGCTATTCAACCTCTACCGACACTTCCACCTCAATCATCAATACCTATACAGCCAAGTTTAGCTCCTCCCCATCCTCCCCCACCTCCCCCACCTCCGCATCCATTAGTTCAGGATCTGAACAATGCTTCTACATTGCCTTCACCTCCTCCTCCACCCCCTCTCCCTCCTATAGGTGGGGATGCCAATAGCACTCCTGGTTTACCTCCATCTGTACAAACAAGTTCAGCCCCTCCACCACCTCCTCCTCCCCCACTTGCACTTGGACCTGTACAAACAACTTTAGTCCCACCACCTCCTCCTCCTCCACCACCAGGTACTGAGGGAACAAATTCAGTCCCACCACCTCCGCCTCCACCTCCCCCTTCAGGTCCTTTGCGAACAGATTTGGCCCCTCCACCTCCACCACCTCCTCCTCCTCCTTTAGGTCCTATCCAAACAGGTTCAGCCCCACCACCACCACCACCTCCACCTCCACCTCCTTTAGGATCTGATCAAACAGGTTCAGCTCCACCACCACCACCTCCACCTCCTCTAGGTCCTGCACAAACAAGTTCAGTTCCACCTCCACCTCCACCTCCTTCAGGTCCTACAGAATTAGGTTCTTTACCCCCACCACCTCCAGGTCTTGTACAAACAGGTTCTGCTCCACCACCACCTCCACCTCCTCCAGGTCCTATACAAACTGGTTCAGCTCCACCTCCACCTCCACCTCCTCCTCCTCCAGGTCATGTGCAAATAGGTTCAGCTCCACCTCCACCTCCACCTCCTCCAGGTCCTGTACGAACAGGTTCAGCTCCACCACCACCTCCACCTCCCCCAGGTGCTGTACAAACAGGTTCAGCCCCACCACCACCACCACCTCCTCCTCCAGGTCCAGTACGAACAGGTTCAACTCCACCACCACCTCCTCCTCCTCCAGGTCCTGTACGAGCAGGTGCAGGTCCACCACCACCTCCACCTCCTCCAGGTCCTGTACGAACAGGTTCAGCCCCTCCACCACCTCCTCCTCCAGGTCCTATACGAGCAGGTTCAGCTCCATCACCACCACCTCCGCCAAGTGTACAAACAGGTTCAGCTCCTCCACCACCACCACCATTGGCACCAAGGCCCCCAGGTGCTCCTCCTCCTCCTCCACCTGGTCGTGGTGCATCTCCAATGCCACCTGCACTTACAGCCACTAGTGTGGCACCACCTCCTGGCAAAGCTTCAACAACAAATGTTGGTAGAGGTCGTGGTACTGGTGTTACTGCTAATGCTCCAAAGAAAACTTTGCTAAAACCCCTACACTGGGTGAAAGTCGCTCGAGCAGCCAAGGGAAGTCTATGGGCTGATTCACAGAAACAGGACAGTGGAACAAGGGCCCCTGAGATAGATATATCAGAACTTGAGACCCTGTTTTCAGCAGCATCTACTTCTGATGGGAGTAGTACTAGAGGAGGAGTTCGGCGTGGTCCTAATATTAACAAGCCGGAGAAAGTACAACTGGTTGACTTGCGTAGAGCATATAATTGTGAAATAATGCTCTCTAAAATCAAAATTCCTTTGCCAGATATGCTTAAAGCTGTACTGGCATTGGATTCTTTGGTTCTTGATATTGATCAGGTTGAGAATCTCATCAAGTTCTGTCCAACAAAGGAAGAGATGGAAATGTTAAAGGTGAACGATTTGAAGGTAAATTTGAACACAATCAACAATGCAGCCAGAGAGGTGAAAGAATCTGGGAAATTGCGTCAAATAATGCAGACTATTCTTACTCTGGGAAATGCCTTGAATCAAGGAACAGCACGGGGATCAGCTGTTGGATTCAAATTGGATAGCCTTCTTAAATTATCTGACACTCGTGCAAGAAATAATAAAATGACTTTAATGCATTATTTGTGTAAGCTTCTTGCTGAGAAAATGCCAGAACTGCTAGATTTTGATAAGGATCTTGTCCATTTGGAAGCAGCTTCTAAGATTCAACTAAAAGCATTGGCCGAGGAAATGCAAGCTGTGAGTAAAGGTTTAGAGAAAGTTGAGCAAGAACTCGCTGCTTCTGAAAATGATGGTGCCATATCAACAGGATTTCGTAAGGTGTTGAAGAATTTTCTTGATATTGCTGAAGCTGATGTGAGGTCCCTTATATCATTGTATTCTGAAGTGGTGAGTCCTGTTGTTATAATAATTCTTCTTTTCCTCCTTTTTTTTCTTGGTGTTGCTCTACACTTGGAGATTGCCCAGTCAGTAGATTTTGATGCTTCATCCCAGATAAAAGGAAGAAGTGCAGACTCTTTGTCCCAATACTTTGGAGAGGATCCAGCTAGATGCCCCTTTGAACAAGAAGGGTATGCCATGGATTTCAGTTTTGCTTTATGTTTTGGAGAGAGTCAACCTGGGGTGCACGTGACACAAATCCTTGTTGTCTTTGTCAAGATGTTCAACAAGTCAAGGGAGGAGAATGAAAGGCAAGCAGATGCTGAAAAGAAGAAATTAGAGAAAGAAGCCTTGAAGGAAAAGGCCGCAAATAATTCACATTCCAAAAGAGACGTGATTCGGTAG 4053 0.4935 MSLLSRFFYKRPPDGLLEFADRVYVFDSCFSTEALPEGMYQLYLRQILSDLHEDFPESSFLALNFRDGDSRSRFSRLLCELDATVIDYPKQYEGCPLLPLSLLHHFLRLCDTCLADPATVILFHCERGGWPLLAFLLAAFLVFRKAQSGERKILEMVHREAPKGLLQLLSALNPMPSQLRYVQYVARRNIGAEWPPPERALSLDCVILRGVPGFDGGNGCRPLFRIFGRNLLSKGGLSTRMIYNMHKKKKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNAENLDILWDSKERYPKGFRAEVLFGEVENISPQRAPTSILDGEVKGGLPIEAFSRVQELFSGAEWIDSGDSAAVWLLKQLTVLNDAKEFSRFQGRGSWYSSPADSEEENNESSTADSSDEAFDVIPRSYADPSKLFTSDTPDLVHLTFENNGGDYVNLTSRTPDQSLTDDVSLPHHALTKETSPCLSPPSPSHFPAIQPLPTLPPQSSIPIQPSLAPPHPPPPPPPPHPLVQDLNNASTLPSPPPPPPLPPIGGDANSTPGLPPSVQTSSAPPPPPPPPLALGPVQTTLVPPPPPPPPPGTEGTNSVPPPPPPPPPSGPLRTDLAPPPPPPPPPPLGPIQTGSAPPPPPPPPPPPLGSDQTGSAPPPPPPPPLGPAQTSSVPPPPPPPSGPTELGSLPPPPPGLVQTGSAPPPPPPPPGPIQTGSAPPPPPPPPPPGHVQIGSAPPPPPPPPGPVRTGSAPPPPPPPPGAVQTGSAPPPPPPPPPGPVRTGSTPPPPPPPPGPVRAGAGPPPPPPPPGPVRTGSAPPPPPPPGPIRAGSAPSPPPPPSVQTGSAPPPPPPLAPRPPGAPPPPPPGRGASPMPPALTATSVAPPPGKASTTNVGRGRGTGVTANAPKKTLLKPLHWVKVARAAKGSLWADSQKQDSGTRAPEIDISELETLFSAASTSDGSSTRGGVRRGPNINKPEKVQLVDLRRAYNCEIMLSKIKIPLPDMLKAVLALDSLVLDIDQVENLIKFCPTKEEMEMLKVNDLKVNLNTINNAAREVKESGKLRQIMQTILTLGNALNQGTARGSAVGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMPELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELAASENDGAISTGFRKVLKNFLDIAEADVRSLISLYSEVVSPVVIIILLFLLFFLGVALHLEIAQSVDFDASSQIKGRSADSLSQYFGEDPARCPFEQEGYAMDFSFALCFGESQPGVHVTQILVVFVKMFNKSREENERQADAEKKKLEKEALKEKAANNSHSKRDVIR 1350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00982 1350 Gene3D - 195 340 - -
Vian10g00982 1350 MobiDBLite consensus disorder prediction 576 890 - -
Vian10g00982 1350 PANTHER FORMIN-J 821 1343 - -
Vian10g00982 1350 ProSiteProfiles C2 tensin-type domain profile. 198 337 IPR014020 -
Vian10g00982 1350 MobiDBLite consensus disorder prediction 1316 1350 - -
Vian10g00982 1350 SUPERFAMILY Formin homology 2 domain (FH2 domain) 865 1223 - -
Vian10g00982 1350 MobiDBLite consensus disorder prediction 973 987 - -
Vian10g00982 1350 MobiDBLite consensus disorder prediction 549 564 - -
Vian10g00982 1350 Pfam C2 domain of PTEN tumour-suppressor protein 197 335 IPR014020 -
Vian10g00982 1350 Coils Coil 1160 1187 - -
Vian10g00982 1350 MobiDBLite consensus disorder prediction 460 926 - -
Vian10g00982 1350 MobiDBLite consensus disorder prediction 902 917 - -
Vian10g00982 1350 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1260 1340 - -
Vian10g00982 1350 SMART PTEN_C2_2 196 1032 IPR014020 -
Vian10g00982 1350 Coils Coil 1058 1078 - -
Vian10g00982 1350 Gene3D Formin, FH2 domain 1058 1346 IPR042201 -
Vian10g00982 1350 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 198 337 IPR035892 -
Vian10g00982 1350 MobiDBLite consensus disorder prediction 498 541 - -
Vian10g00982 1350 Gene3D Protein tyrosine phosphatase superfamily 15 189 IPR029021 -
Vian10g00982 1350 Coils Coil 1312 1339 - -
Vian10g00982 1350 Gene3D Formin, FH2 domain 920 1057 IPR042201 -
Vian10g00982 1350 ProSiteProfiles Formin homology-2 (FH2) domain profile. 882 1279 IPR015425 -
Vian10g00982 1350 MobiDBLite consensus disorder prediction 462 479 - -
Vian10g00982 1350 SMART it6_source 530 1345 IPR015425 -
Vian10g00982 1350 MobiDBLite consensus disorder prediction 407 431 - -
Vian10g00982 1350 MobiDBLite consensus disorder prediction 973 993 - -
Vian10g00982 1350 Pfam Formin Homology 2 Domain 1057 1221 IPR015425 -
Vian10g00982 1350 Pfam Formin Homology 2 Domain 925 1057 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00982 Vian-Chr10 10691631 10701253 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00982 885 1321 FH2 protein (formin) Gene Family AT1G31810 60.124 6.08e-165 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00982 - - var:108334847 1160.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00982 10 10691631 10701253 Vian10g00982 10 10691631 10701253 ECH