Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00977 ATGGAGAGCAACGAGATTCTAGAGGAGCTTCTCAACATTGAGGTCGAGATTCAAGATGTTCAAGAACAAATAAGGGCGTTAATTGAGAGACAAGAGAATCTGTACGAGAGAAAATCGGAGCTGAGTGCTATTTTAGAGGCGTGTAAGGAATCTGGAAACGAGGCCAGTAATGTGGCTTCAAGCGCCGTGGAAGATTGGAGTGGGACATTTGAATGGGATTCTGAAGCAGATGATGTTAGGTTGAATGTTTTTGGCATTTCATCTTACCGTGCAAATCAAAGAGAGATAATTAACGCCATTATGAGTGGAAGAGACGTTCTGGTTATTATGGCTGCAGGTGGTGGCAAGAGTCTCTGCTACCAGCTTCCTGCTGTTCTTCGTGAAGGAATTGCTTTAGTTGTCAGTCCTTTGCTTTCCTTAATTCAAGATCAGGTAATGGGTTTGACTGCACTGGGCATTCCTGCGTATATGTTGACTTCAACAAATAAGGGAGATGAGAAGTTCATATACAAGGCTTTGGAGAAGGGAGAGGGGGACCTCAAAGTATTGTACGTCACCCCAGAAAAGATATCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAATGTCATCATGCCGGTCGTCTCTCTCTAATTTCAATTGATGAAGCACATTGCTGTAGTCAGTGGGGCCACGACTTTCGACCTGACTACAAGAGCCTCGGTATTCTCAAGACACAGTTTCCTAATGTTCCTATGGTGGCTTTGACTGCAACTGCTACTCAGAGGGTCCAAAACGATCTGACAGAGATGTTGCATATTCCTAGATGTGTCAAATTTGTCAGCACAGTCAATAGGCCAAATTTGTTTTATATGGTAAAGGAAAAGTCATCAGTTGGGAAGGTAGTCATTGATGAAATTGCACAGTTCATTCAAGAATCTTATCCAAATAATGAATCAGGGATTGTTTATTGCTTCTCTAGGAAGGAATGTGAACAGGTTGCGAAGGAGTTGAGGGAGAGAAGAATTTCAGCTGATTATTATCATGCAGATATGGATGTAAATGCTCGGGAAAAAGTTCACATGCGGTGGAGCAATAATAAGCTGCAGGTCATAGTTGGCACAGTAGCTTTTGGTATGGGAATCAATAAACCAGATGTCAGGTTTGTCATCCATCATAGCTTGAGTAAATCAATGGAAACATACTACCAGGAAAGTGGACGAGCTGGCCGAGATGGACTTCCTTCGGAATGCCTACTGTTCTTTAGGCCTGGTGATGTTCCACGGCAGAGTTCAATGGTCTTCTATGAAAATACGGGGCTGCAGAATCTCTATGACATAGTACGATATTGTCAGTCCAAAAGACAATGTCGACGAAGTGCCTTTTTCCGGCATTTTGCTGAGCCACTTCAAGAGTGCAATGGGCTGTGTGACATCTGTGCATTATCAAGAGAGGTGAAAGAAGTGGATGTCTCTGATCTTGCAAAACTGATGGTTTCATTCATGCAAAATATGCAAGCAAATGATCAGAGGTCAACAATGTTGCAATTAGTTGATAAAATGAAAATAAAACAGAAGGAACTAGGTTCTGAATTGAAGCGAGAGGAAATTGAGCAGCTCATCTTACACCTTTTATTGGGGCGGTTTTTGAAAGAAGAATTTCAGCATACAGCTTATGCCACAAATGCCTACATTGCCGTGGGGCCATTGGCCAAGCAAATACTACAAGGGAAGAAAACTGTGACACTTGAGATTTACACTGAACAGAATGCTGGTGTAAGATCAGTGAAGCGTCGCTGCCTTGGGTCCTCTGGTTTGGAGCTAAAGCTTGATGAGCTGAGAAAAGAGCTGTCCTATGCTGGAGGAATACTCCCACATTCAGTCTTATCCATGGAACAAATCCGCTTATTAAGTTCTCAAAAACCAAATTCACTGGAACAGTTGGAGAAGGTAATTGGAAAATTGAAGACAGAAAAGTACGGAAGTAGAATACTTAAGCAAATTAAAAAGTATTCGGATTCCGAGCCGGCTGATAAACAAGAAACTGATGGTAGAGCAGCAAAGAGGTCAAAAACCAAGAAAAATCTTGTTCTCATTGACAGTAATGAAGATGAGGATTGA 2100 0.4181 MESNEILEELLNIEVEIQDVQEQIRALIERQENLYERKSELSAILEACKESGNEASNVASSAVEDWSGTFEWDSEADDVRLNVFGISSYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTNKGDEKFIYKALEKGEGDLKVLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKSLGILKTQFPNVPMVALTATATQRVQNDLTEMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKVVIDEIAQFIQESYPNNESGIVYCFSRKECEQVAKELRERRISADYYHADMDVNAREKVHMRWSNNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLFFRPGDVPRQSSMVFYENTGLQNLYDIVRYCQSKRQCRRSAFFRHFAEPLQECNGLCDICALSREVKEVDVSDLAKLMVSFMQNMQANDQRSTMLQLVDKMKIKQKELGSELKREEIEQLILHLLLGRFLKEEFQHTAYATNAYIAVGPLAKQILQGKKTVTLEIYTEQNAGVRSVKRRCLGSSGLELKLDELRKELSYAGGILPHSVLSMEQIRLLSSQKPNSLEQLEKVIGKLKTEKYGSRILKQIKKYSDSEPADKQETDGRAAKRSKTKKNLVLIDSNEDED 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00977 699 Pfam HRDC domain 602 660 IPR002121 GO:0003676
Vian10g00977 699 Coils Coil 511 531 - -
Vian10g00977 699 FunFam ATP-dependent DNA helicase 279 475 - -
Vian10g00977 699 FunFam ATP-dependent DNA helicase 479 579 - -
Vian10g00977 699 Coils Coil 3 37 - -
Vian10g00977 699 Pfam Helicase conserved C-terminal domain 303 405 IPR001650 -
Vian10g00977 699 CDD SF2_C_RecQ 279 415 - -
Vian10g00977 699 CDD DEXHc_RecQ1 71 278 - -
Vian10g00977 699 SMART RQC_2 483 580 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vian10g00977 699 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 296 445 IPR001650 -
Vian10g00977 699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 422 IPR027417 -
Vian10g00977 699 SMART helicmild6 325 406 IPR001650 -
Vian10g00977 699 Pfam DEAD/DEAH box helicase 91 258 IPR011545 GO:0003676|GO:0005524
Vian10g00977 699 SUPERFAMILY HRDC-like 602 665 IPR010997 GO:0000166|GO:0044237
Vian10g00977 699 PANTHER DNA HELICASE RECQ FAMILY MEMBER 67 653 - -
Vian10g00977 699 Pfam RQC domain 480 583 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vian10g00977 699 NCBIfam RecQ family ATP-dependent DNA helicase 82 505 IPR004589 GO:0004386|GO:0006310
Vian10g00977 699 FunFam ATP-dependent DNA helicase 46 278 - -
Vian10g00977 699 MobiDBLite consensus disorder prediction 664 699 - -
Vian10g00977 699 Gene3D HRDC domain 597 666 IPR044876 -
Vian10g00977 699 Gene3D - 479 579 IPR036388 -
Vian10g00977 699 SMART ultradead3 85 287 IPR014001 -
Vian10g00977 699 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 271 IPR014001 -
Vian10g00977 699 MobiDBLite consensus disorder prediction 664 693 - -
Vian10g00977 699 ProSiteProfiles HRDC domain profile. 593 671 IPR002121 GO:0003676
Vian10g00977 699 Gene3D - 46 278 IPR027417 -
Vian10g00977 699 Gene3D - 279 475 IPR027417 -
Vian10g00977 699 Pfam RecQ zinc-binding 418 474 IPR032284 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00977 Vian-Chr10 10601318 10613044 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00977 84 420 Eukaryotic Initiation Factors Gene Family AT3G19760 20.000 5.23e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00977 K10899 - gmx:100817635 1218.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00977 10 10601318 10613044 Vian10g00977 10 10601318 10613044 ECH