Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00963 ATGGGGTCCAGTGGCAGCAAAGCCAGGTCGTCGTCGTCGTCTTCGGGGAGTTTCAGGAAGGGTCGATCTAAGGGGCACAGAGGTTTCCCATCTTATTGTCTGGGAACGTCGTCTGGATCTCGTGACATTGATAGTGACGACCAGGTTTGTGATCAGAATAAAGTAAACCGAGATGATGTGACATACACCAGTGGCAATGAAGTAGACTCAGATGAAGGGAAGACAGAGTCTTTTAGAAAGGTGAAACCTGGTAAGTCTGATGAAGTGCCTTCTAACATTGACCTTGAAGAGTGGCGTCACAGTGCATCCAGAACTGGTAGCAGCTCTGCACATTCTTCTTCAAACCACTCCTTGAACCCCTCAAGTCGGTTCTTGTCTCGCTTTAGCCTTGTTCCTGGTAATATAAGCTTCAGACTTAGCAGAACCACAAGTTTGGGATCATCTAGGCCTTGCCCTGTTTCTTCAACAAGTATCTCAATATTTAATGATGAAGATGAGCTTAGTCTACATTCAGGGCCTCCTGGCAGCTTGATTAATAGAAATGAAACTCAACACCGTAGTGATTTGCTCAATGCATCTTTTGTTAGTCAAGTGCCTATGCAGTGTCATGAAGAAGCTTCTAATAATTTGCGTCCTAATGCCCCAGCATTGGTTTCACCTGGTAATTTGGCTAGTAGTCGCCCAGTTTCTTCTATCCAGGATGTGGGTAGAGATGGAAATGGTGCAAGAGAAGTGCCTGATGCCAACATGTTTTCTCCAAGAATTCATACTGATACAGAAAATACTGAGACTAGACATACTGATAGGCGAAATGGAGCTCGAGAACCTGTGGAACGTAATGTTCGTTTTAGCCGAACTTTAAGTGTTGGAAGGCTCCGTGACAGAGTTCTCCGCCGATCAACGTTGTCAGACTTCACCTTTTGCCCCATGCAACGAGAGAGAGAAGTAAGAGAGGCTGGTCAAGAGAATGGAAGACGAGTAGGGGATAGAGAAGCAAGAGTGTCACCAACTGGTCGTAATGCTTCAAATTCTTCTACACCTAGATATCCTCTACCCAGTACACCTAGCTCCTTGTTTGGCATCCAAGACTATGAAGTTGAGACTTCACGTTCTAGAGAAACTAGGTATCAGGATCTGCTGGAACATAGGTCCAATTTCCTGGAACGGAGAAGAAGAATACGGTCCCAGGTCCGTGCTCTTCAGAGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCATGTGTCTTGTCTGGTCAACACAGAAACGGTCGTTGTGCATGCAGAACCAATAGTCGGGATACCAATTCAAATGATGATACCAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTGTTTGAAGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCTTCTCGCCCTTCTGTGTCATCTATCGGTTCCATTCCTGCACCTAATGAAGTTGTGGAATCCTTGCCTGTCAAATTATACACAAAGTTGCACAAACATCAAGAAGAACCTGTACAATGTTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGAGAGTTCTGCCTTGTCATCATGAATTTCATACAACATGTGTAGACAAGTGGCTGAAGGAGATTCACAGACCAGTCAACCAAGTGGCTGCAAAACCATAA 1677 0.446 MGSSGSKARSSSSSSGSFRKGRSKGHRGFPSYCLGTSSGSRDIDSDDQVCDQNKVNRDDVTYTSGNEVDSDEGKTESFRKVKPGKSDEVPSNIDLEEWRHSASRTGSSSAHSSSNHSLNPSSRFLSRFSLVPGNISFRLSRTTSLGSSRPCPVSSTSISIFNDEDELSLHSGPPGSLINRNETQHRSDLLNASFVSQVPMQCHEEASNNLRPNAPALVSPGNLASSRPVSSIQDVGRDGNGAREVPDANMFSPRIHTDTENTETRHTDRRNGAREPVERNVRFSRTLSVGRLRDRVLRRSTLSDFTFCPMQREREVREAGQENGRRVGDREARVSPTGRNASNSSTPRYPLPSTPSSLFGIQDYEVETSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCVLSGQHRNGRCACRTNSRDTNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSIPAPNEVVESLPVKLYTKLHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCVDKWLKEIHRPVNQVAAKP 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00963 558 MobiDBLite consensus disorder prediction 316 333 - -
Vian10g00963 558 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 477 551 IPR013083 -
Vian10g00963 558 MobiDBLite consensus disorder prediction 258 277 - -
Vian10g00963 558 FunFam Putative RING zinc finger domain superfamily protein 482 555 - -
Vian10g00963 558 SUPERFAMILY RING/U-box 491 546 - -
Vian10g00963 558 MobiDBLite consensus disorder prediction 316 357 - -
Vian10g00963 558 Pfam RING-like zinc finger 512 540 IPR001841 -
Vian10g00963 558 MobiDBLite consensus disorder prediction 1 19 - -
Vian10g00963 558 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 549 - -
Vian10g00963 558 MobiDBLite consensus disorder prediction 1 120 - -
Vian10g00963 558 MobiDBLite consensus disorder prediction 336 357 - -
Vian10g00963 558 MobiDBLite consensus disorder prediction 69 101 - -
Vian10g00963 558 MobiDBLite consensus disorder prediction 102 120 - -
Vian10g00963 558 MobiDBLite consensus disorder prediction 221 277 - -
Vian10g00963 558 ProSiteProfiles Zinc finger RING-type profile. 513 553 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00963 Vian-Chr10 10418989 10423441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00963 232 548 C3H Transcription Factor Family AT5G45290 61.728 2.60e-112 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00963 - - gmx:100815830 894.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00963 10 10418989 10423441 Vian10g00963 10 10418989 10423441 ECH