Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00962 ATGAAGAGCATAAACGACGACGGTTCCACGCAAGATCTCGACCCTCAGAGCGACCACAGCTCCGATTACTTAACTCACCCAAACTCTAACCCCCAACCTCACCCTCACCCGCGCCGTCCGCGGGGTTTCGCGGCGGCGGCGGCGGTCACTACCAATTCCGTCGCCAAGGGAAAGAAGGAGAGAGAGAAGGAGAAGGAGCGAACCAAGCTCCGGGAGCGACATCGCCGGGCCATCACCAGTCGCATGCTCGCTGGCCTCCGCCAGTACGGCAATTTCCCCCTGCCCGCGCGTGCAGACATGAACGACGTACTCGCCGCGCTCGCGCGTGAGGCTGGTTGGGTTGTTGACGCCGATGGAACCACCTATCGCCAGTGTCCCCCTCCCTCTCACATGGGGTCATTTGCGGCTAAATCAGTCGAAAGTCAACTCTCTGGTGGTTCTTTGAGGAATTGTTCTGTTAAGGAAACGATTGAGAATCAGACATCTGTGCTTAGAATTGATGAATGCTTGTCGCCTGCATCCATTGATTCTGTTGTAATTGCAGAAAGGGACTCAAAGAACGAGAAATATACAAATGCAAGCCCCATCAATACTGTTGACTGCTTGGAGGCTGATCAGCTTATGCAAGATATTCATTCTGGGGTGCACGAAAATGATTTTACTGGCACACCATATGTTCCTGTTTATGTAAAGCTTCCGGCTGGTATTATTAACAAATTTTGCCAGTTGATTGATCCTGAAGGCATTAAGCAGGAGCTAATGCATATGAAGTCTTTAAATGTAGATGGTGTTGTTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAGCCCGCAGAAATATGTGTGGTCTGGCTATAGGGAGCTTTTTAACATCGTTAGAAAATTCAAACTTAAGTTACAGGTTGTTATGGCTTTTCATGAATGTGGAGGGAATGATTCTAGTGATGCATTGATTTCCCTCCCACAATGGGTTTTGGATATTGGAAAAGACAACCAGGATATATTCTTCACAGATCGTGAAGGACGGAGAAATACTGAATGCCTTTCTTGGGGGATTGACAAAGAACGAGTTCTCAAAGGAAGAACTGGAATTGAGGTCTATTTCGATATGATGAGAAGCTTTCGGACAGAGTTTGATGACCTGTTTGCAGAAGGTCTGATTTCTGCTGTTGAAGTTGGCCTTGGGGCATCCGGAGAGCTGAAATATCCTTCTTTCTCAGAAAGAATGGGATGGAGGTATCCTGGTATCGGTGAGTTTCAGTGCTATGATAAATACCTGCAACATAGTCTGCGGAGAGCAGCCAAATTACGTGGTCATTCTTTCTGGGCTAGAGGACCTGATAATGCTGGACATTACAATTCTATGCCGCATGAAACTGGATTCTTTTGTGAGCGAGGTGATTATGACAATTACTATGGACGATTCTTCTTACATTGGTACTCCCAGACATTAATAGACCATGCAGATAATGTTTTGTCTCTTGCAACCCTTGCTTTCGAGGAGACAAAAATAATTGTCAAGGTTCCTGCTGTATACTGGTGGTACAAGACTCCTAGTCATGCGGCAGAGTTGACAGCAGGATATCACAACCCAACAAATCAGGATGGGTACTTTCCTGTGTTTGAGGTTTTAAGAAAACATGCTGTCACCATGAAATTCGTCTGCTTAGGGTTTCATCTTTCCAGCCAGGAAGCTAACGAATCATTGATTGATCCTGAGGGTCTGAGTTGGCAGGTGTTAAACTCAGCTTGGGATCGTGGGTTGATGGCTGGTGGAGAGAATGCACTCCTCTGCTACGATAGAGAAGGGTACAAGAGATTGGTTGACACGGCAAAGCCGAGAAATGATCCTGATCATCGACATTTTTCATTCTTTGTTTACCAGCAACCATCTTTGCTGCAGGCTAATGTTTGCTTGTCCGATTTGGATTTCTTCGTTAAATGCATGCATGGTAAGGACCCCTGGAATTTACTCTGTTTTATGTGA 1989 0.4635 MKSINDDGSTQDLDPQSDHSSDYLTHPNSNPQPHPHPRRPRGFAAAAAVTTNSVAKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTYRQCPPPSHMGSFAAKSVESQLSGGSLRNCSVKETIENQTSVLRIDECLSPASIDSVVIAERDSKNEKYTNASPINTVDCLEADQLMQDIHSGVHENDFTGTPYVPVYVKLPAGIINKFCQLIDPEGIKQELMHMKSLNVDGVVVDCWWGIVEGWSPQKYVWSGYRELFNIVRKFKLKLQVVMAFHECGGNDSSDALISLPQWVLDIGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDMMRSFRTEFDDLFAEGLISAVEVGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLQHSLRRAAKLRGHSFWARGPDNAGHYNSMPHETGFFCERGDYDNYYGRFFLHWYSQTLIDHADNVLSLATLAFEETKIIVKVPAVYWWYKTPSHAAELTAGYHNPTNQDGYFPVFEVLRKHAVTMKFVCLGFHLSSQEANESLIDPEGLSWQVLNSAWDRGLMAGGENALLCYDREGYKRLVDTAKPRNDPDHRHFSFFVYQQPSLLQANVCLSDLDFFVKCMHGKDPWNLLCFM 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00962 662 Pfam Glycosyl hydrolase family 14 243 618 IPR001554 GO:0000272|GO:0016161
Vian10g00962 662 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 159 653 IPR001554 GO:0000272|GO:0016161
Vian10g00962 662 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 469 488 IPR001554 GO:0000272|GO:0016161
Vian10g00962 662 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 538 561 IPR001554 GO:0000272|GO:0016161
Vian10g00962 662 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 281 299 IPR001554 GO:0000272|GO:0016161
Vian10g00962 662 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 396 418 IPR001554 GO:0000272|GO:0016161
Vian10g00962 662 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 503 519 IPR001554 GO:0000272|GO:0016161
Vian10g00962 662 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 260 274 IPR001554 GO:0000272|GO:0016161
Vian10g00962 662 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 520 531 IPR001554 GO:0000272|GO:0016161
Vian10g00962 662 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 576 598 IPR001554 GO:0000272|GO:0016161
Vian10g00962 662 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 303 324 IPR001554 GO:0000272|GO:0016161
Vian10g00962 662 MobiDBLite consensus disorder prediction 1 29 - -
Vian10g00962 662 SUPERFAMILY (Trans)glycosidases 220 652 IPR017853 -
Vian10g00962 662 Gene3D Glycosidases 216 658 - -
Vian10g00962 662 Pfam BES1/BZR1 plant transcription factor, N-terminal 56 202 IPR008540 -
Vian10g00962 662 MobiDBLite consensus disorder prediction 1 72 - -
Vian10g00962 662 MobiDBLite consensus disorder prediction 55 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00962 Vian-Chr10 10411036 10416882 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00962 14 652 Glycoside Hydrolase AT5G45300 67.066 0.0 893
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Vian10g00962 Glyco_hydro_14 3e-87 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00962 K01177 - gmx:100777004 1233.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00962 10 10411036 10416882 Vian10g00962 10 10411036 10416882 ECH