Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00944 ATGGCCGATCGCTTGACGCGTATTGCCATAGTTAGCAACGACAGGTGCAAGCCCAAGAAGTGTCGCCAGGAGTGCAAGAAGAGTTGTCCAGTGGTCAGAACCGGTAGATTGTGTATTGAGGTTACTTCAGCTTCGAAGATTGCTTACATTTCTGAGGAATTGTGCATTGGATGCGGTATTTGTGTTAAGAAATGTCCTTTTGAAGCTATTCAGATTATCAACTTGCCAAAGGACTTGGATAAGGATACTACTCACAGATACGGTCCCAATACTTTTAAGCTGCATAGGTTGCCGGTGCCAAGGCCCGGACAGGTGCTTGGATTGGTCGGGACGAATGGGATTGGGAAGTCCACTGCCCTTAAAGTTTTGGCTGGGAAGTTGAAGCCGAACTTGGGTCGATTTACTAATCCCCCTGACTGGCAGGAAATTTTGACATACTTTCGAGGATCTGAATTGCAGAATTACTTTACTCGTATTCTCGAGGATGATTTGAAGGCTATCATCAAGCCTCAGTATGTTGACCATATTCCAAAAGCTGTGCAAGGAAATGTGGGCCAGGTGCTAGACCAGAAAGATGAGAGAGACATGAAGAAGGAGCTTTGTGCAGATCTTGAGCTTAATCAAGTTATAGATCGTAATGTTGGGGATCTTTCAGGTGGTGAGCTCCAAAGGTTTGCCATTGCGGTTGTTGCAATCCAGAATGCTGAGATATACATGTTTGATGAACCGTCCAGTTATCTTGATGTGAAACAGAGGCTGAAAGCTGCACAAGTTATTCGATCATTGCTCAGGCCTAATAGTTATGTAATTGTTGTAGAGCACGATCTTAGTGTCTTGGACTACTTATCAGACTTTATTTGCTGTCTATATGGCAAACCTGGTGCATATGGAGTGGTGACACTTCCTTTCTCTGTCAGAGAAGGAATTAACATCTTCTTGGCTGGCTTTGTTCCGACAGAAAATCTGAGGTTCCGGGATGATTCGCTAACCTTCAAGGTTGCTGAGACTCCACAGGAAAGTGCTGAGGAAGCTCAGACATATGCTCGATATAAATACCCAACAATGACCAAAACTCAAGGCAATTTTAAACTTCGTGTAGTTGAAGGAGAATTTACTGATTCTCAGATTATTGTGATGCTGGGTGAGAATGGGACGGGAAAGACAACATTCATTCGTATGCTGGCTGGTTTATTGAAACCTGACAGCATAGAAGGTGGATCTGATGTGGAGATGCCTGAATTTAATGTTTCGTACAAGCCTCAGAAGATTAGTCCGAAGTTCCAATCAACTGTTAGGCACTTGCTACATCAAAAAATACGTGATGCATATACTCATCCCCAGTTTGTTTCAGATGTGATGAAGCCACTTCTTATCGAACAGTTAATGGACCAAGAAGTGGTGAATCTTTCTGGAGGAGAGTTGCAGCGAGTTGCTCTGTGTCTCTGTCTTGGCAAGCCTGCAGATATCTATCTGATAGATGAGCCAAGTGCATATCTAGATTCTGAACAGCGAATTCATGCTGCCAAAGTGATCAAGAGGTTTATTCTTCATGCAAAGAAAACGGCTTTTGTCGTTGAGCATGATTTCATCATGGCAACTTATCTCGCAGACAGAGTTATTGTTTATGCTGGTCAACCATCAATTGATTGTGTTGCAAATTCTCCTCAATCATTGTTGTCTGGGATGAACCTTTTCTTATCGCATCTTGATATCACATTTAGAAGGGACCCAACTAATTTTCGCCCAAGGATCAACAAACTTGATTCAACCAAGGACAGAGAACAAAAGTCTGCTGGGTCTTATTATTACCTTGATGACTGA 1821 0.4283 MADRLTRIAIVSNDRCKPKKCRQECKKSCPVVRTGRLCIEVTSASKIAYISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKVLAGKLKPNLGRFTNPPDWQEILTYFRGSELQNYFTRILEDDLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKKELCADLELNQVIDRNVGDLSGGELQRFAIAVVAIQNAEIYMFDEPSSYLDVKQRLKAAQVIRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDDSLTFKVAETPQESAEEAQTYARYKYPTMTKTQGNFKLRVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSIEGGSDVEMPEFNVSYKPQKISPKFQSTVRHLLHQKIRDAYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIHAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYAGQPSIDCVANSPQSLLSGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDREQKSAGSYYYLDD 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00944 606 Gene3D - 337 604 IPR027417 -
Vian10g00944 606 PRINTS ABC transporter family E signature 79 99 IPR013283 -
Vian10g00944 606 PRINTS ABC transporter family E signature 52 76 IPR013283 -
Vian10g00944 606 PRINTS ABC transporter family E signature 140 156 IPR013283 -
Vian10g00944 606 PRINTS ABC transporter family E signature 24 39 IPR013283 -
Vian10g00944 606 PRINTS ABC transporter family E signature 107 132 IPR013283 -
Vian10g00944 606 PRINTS ABC transporter family E signature 156 182 IPR013283 -
Vian10g00944 606 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 46 75 IPR017896 -
Vian10g00944 606 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 70 315 IPR003439 GO:0005524
Vian10g00944 606 ProSitePatterns ABC transporters family signature. 217 231 IPR017871 GO:0005524|GO:0016887
Vian10g00944 606 Pfam ABC transporter 367 497 IPR003439 GO:0005524
Vian10g00944 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 291 IPR027417 -
Vian10g00944 606 SUPERFAMILY 4Fe-4S ferredoxins 6 145 - -
Vian10g00944 606 FunFam ATP-binding cassette, sub-family E, member 1 1 332 - -
Vian10g00944 606 Gene3D - 1 332 IPR027417 -
Vian10g00944 606 CDD ABC_RNaseL_inhibitor_domain2 350 599 - -
Vian10g00944 606 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 344 569 IPR003439 GO:0005524
Vian10g00944 606 Pfam 4Fe-4S binding domain 49 71 IPR017896 -
Vian10g00944 606 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 55 66 IPR017900 -
Vian10g00944 606 Pfam Possible Fer4-like domain in RNase L inhibitor, RLI 6 37 IPR007209 -
Vian10g00944 606 CDD ABC_RNaseL_inhibitor_domain1 78 332 IPR034348 -
Vian10g00944 606 ProSitePatterns ABC transporters family signature. 469 483 IPR017871 GO:0005524|GO:0016887
Vian10g00944 606 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 606 IPR013283 -
Vian10g00944 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 542 IPR027417 -
Vian10g00944 606 Pfam ABC transporter 102 244 IPR003439 GO:0005524
Vian10g00944 606 SMART AAA_5 373 547 IPR003593 GO:0016887
Vian10g00944 606 SMART AAA_5 102 294 IPR003593 GO:0016887
Vian10g00944 606 FunFam ATP-binding cassette sub-family E member 1 334 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00944 Vian-Chr10 9818112 9822816 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00944 350 527 Calmodulin-binding Proteins AT2G36910 24.242 6.92e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00944 10 9818112 9822816 Vian10g00944 10 9818112 9822816 ECH