Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00940 ATGGACCAAAATTTACCAAATCTGCAAGTTCAGGACAGGAAAAGGTATAAAAGATGGTCCCCAACTGAAGAACAAGTGGCCTTATTAAAGGCATTATTTGTGCACGGGATAAGAAACCCGAATAGAGAACAAGCACACGAAATCTCAGAAAAACTTAGGGTTTATGGGGAGGTCAGGGAAATTAGTGTCCAATACTGGTTTCAGAACTATGGGTACCGCTACAGACAGAAACGCCGGAAGCGCAGCACAACTACCATATCCTACTCCCCCATACCCCTTCTTTTGGATGATCTATTAAGGACATTGCCGCCAGTGCCAGATCGAGTGACGCTCGATCTCTTTCCGATCCCACCTGTTCCGGACAAAGCTGAGGTCCCTCCCGTCTTTGGGTTCCCGGTGAAGCCTCCCTCTGTCGAACTCACCTTGCGACTGCCCTCGGCTGACGAGTAG 450 0.4889 MDQNLPNLQVQDRKRYKRWSPTEEQVALLKALFVHGIRNPNREQAHEISEKLRVYGEVREISVQYWFQNYGYRYRQKRRKRSTTTISYSPIPLLLDDLLRTLPPVPDRVTLDLFPIPPVPDKAEVPPVFGFPVKPPSVELTLRLPSADE 149
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00940 149 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 11 84 IPR044555 GO:0003700|GO:0099402
Vian10g00940 149 SMART HOX_1 14 83 IPR001356 GO:0003677
Vian10g00940 149 Gene3D - 1 69 - -
Vian10g00940 149 CDD homeodomain 15 69 IPR001356 GO:0003677
Vian10g00940 149 Pfam Homeodomain 15 76 IPR001356 GO:0003677
Vian10g00940 149 SUPERFAMILY Homeodomain-like 8 80 IPR009057 -
Vian10g00940 149 ProSiteProfiles 'Homeobox' domain profile. 12 77 IPR001356 GO:0003677
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vian10g00940 Vian-Chr10 9775501 9776041 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00940 18 88 Wox Gene Family AT5G05770 47.887 2.81e-16 68.6
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian10g00940 Homeodomain 9e-12 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00940 - - vum:124821198 177.178