Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00917 ATGAGTGATGCAAAAGAACACGAAGAGGCTGCCCAGGGCGAGCCCTTGGTCGTGGAAGAGAACAAGTTGTTGGTTGATACAAAGGATCGAGTTCAGCCTCAAGATGCCTCTGCTGCTGTTCCAGAAGAGGAAGCGTCAAACCTTGCTGAAAATGGGTCAAATCATGTCGAAAGTGGGTCAAATCCTGCTGAAAATAAGAAGGAAGAGCCATCTGCTGCTGAACATAAAAATGTGGAACCTCAGGTTGTTTCAGAAGGAATTTCACAAGAGGATGTCCAAAATACTCTTCACTCTGTCCCATTAGAGGTTCATACTCAGGTTTTGGATACGACAGAATGTGAAGAAGCGTCTAAAGCGAAGGGGGAAGCTGAAAATTTTCCCACAAGTGATAAGAAGGTTGAGAATAGTGATGATATTCGTCAGAATAGTATTGATGATGTTGGAATGGCTGTGGAAGTGAAGCCTGAAGGCTGTGGAGTGATTGACAGTAAAACTTGCGACAATGGTGATCCAATGCCTGCAAGTCATAATGAGCCTGCTATATCACAATCTGCTCCTGCTGATACAAACACTGAATTTGTGAATGTATTAGAAGTTGAGAATAAGGCTGATGAAAAGCAAGCTATCGATCCTGCTGATAATGGGAATTCAAACTCAAAGCACTTGTCTTTCTTGGATGCTGACCATTCCTATGATGGTAATGAGTCAGGAACCGAGGAGGATCAGTCAGCATTCACGAAGGAGCTTGAAAACTTCTTTAGGGAGAGGAGCATGGAATTCAAACATCCCAAGTTTTATGGAGAAGGACTAAATTGCCTCAAGTTGTGGAGAGCTGTAACGAGATTGGGTGGCTATGATAAGGTGACTTCATGTAAGTTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAAGACATGCACCACTGTCTCATGGACTTTCCGGGGATTTTATGAGAAGGCACTTCTTGATTATGAAAGACATAAAATAAAAGGTGGTGAGCTAAATGTGCCGATTTCTTCTCACCCAGAGCCAATAAATATTGAAAATCAGGCTTCAGCATCAGGTAGAGCCCGGAGAGATGCTGCAGCACGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTAGGGAATGGTGAAGTTAGTGACCCTATTATTAAGGATAGGAATTCCATGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCAATTTGCACAAACGTAAAAAGCCATCTTCACCTTACATGGATAATGCAGTCAAGGCTGCACGCAGTAAACCTTCTAAACCCCAATTGGACACAACTGTGATTGATATAGGACCTCCTGCTGACTGGGTAAAAGTCAATGTACAAAAAACTAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTTCTGCGGGAAGAGGTTCGTGTACAGTCAGACCCAGCAGGACGCCTAGTCATAAGTGGTGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAGAAAGGTCGTCAGCTTGCCCTCAAGAATTGATCCCCATCAGACGTCGGCGGTGGTGACGCTGCATGGGCAGTTGTTTGTTCGTGTACCATTTGAACAGTCCGAATAG 1608 0.4459 MSDAKEHEEAAQGEPLVVEENKLLVDTKDRVQPQDASAAVPEEEASNLAENGSNHVESGSNPAENKKEEPSAAEHKNVEPQVVSEGISQEDVQNTLHSVPLEVHTQVLDTTECEEASKAKGEAENFPTSDKKVENSDDIRQNSIDDVGMAVEVKPEGCGVIDSKTCDNGDPMPASHNEPAISQSAPADTNTEFVNVLEVENKADEKQAIDPADNGNSNSKHLSFLDADHSYDGNESGTEEDQSAFTKELENFFRERSMEFKHPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIKGGELNVPISSHPEPINIENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSMSVQKREKQLKSINLHKRKKPSSPYMDNAVKAARSKPSKPQLDTTVIDIGPPADWVKVNVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFRKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00917 535 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 435 535 IPR002068 -
Vian10g00917 535 SMART ARID_2 236 326 - -
Vian10g00917 535 MobiDBLite consensus disorder prediction 225 243 - -
Vian10g00917 535 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 11 534 IPR045147 GO:0006357
Vian10g00917 535 MobiDBLite consensus disorder prediction 1 79 - -
Vian10g00917 535 MobiDBLite consensus disorder prediction 113 141 - -
Vian10g00917 535 Pfam ARID/BRIGHT DNA binding domain 242 326 IPR001606 GO:0003677
Vian10g00917 535 MobiDBLite consensus disorder prediction 61 75 - -
Vian10g00917 535 CDD ACD_sHsps-like 450 530 - -
Vian10g00917 535 MobiDBLite consensus disorder prediction 1 29 - -
Vian10g00917 535 FunFam AT-rich interactive domain-containing protein 3 427 535 - -
Vian10g00917 535 CDD ARID 241 326 - -
Vian10g00917 535 FunFam AT-rich interactive domain-containing protein 3 239 338 - -
Vian10g00917 535 SUPERFAMILY HSP20-like chaperones 444 531 IPR008978 -
Vian10g00917 535 MobiDBLite consensus disorder prediction 113 148 - -
Vian10g00917 535 Pfam Hsp20/alpha crystallin family 452 534 IPR002068 -
Vian10g00917 535 Gene3D - 239 336 IPR036431 GO:0003677
Vian10g00917 535 Gene3D - 437 535 IPR008978 -
Vian10g00917 535 SMART bright_3 240 331 IPR001606 GO:0003677
Vian10g00917 535 SUPERFAMILY ARID-like 234 342 IPR036431 GO:0003677
Vian10g00917 535 ProSiteProfiles ARID domain profile. 239 330 IPR001606 GO:0003677
Vian10g00917 535 MobiDBLite consensus disorder prediction 204 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00917 Vian-Chr10 9457272 9462798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00917 234 533 ARID Transcription Factor Family AT1G76510 64.918 4.41e-131 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vian10g00917 HSP20 2.6e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00917 - - gmx:100791081 872.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00917 10 9457272 9462798 Vian10g00917 10 9457272 9462798 ECH