Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00899 ATGATTGCTTCCGTTCTAAGCTCTCCGTTTTCCCTATTTCTTCTCATTTTTCTCTTCTTCAGCCTTTCCACCTCACAATCCCAACTTTTGCTGCCTTCTTCTCCGCCCTCAGTTAAACCGGCCACCGCACTCGTCGCCGCCCTGGATGGTACCGTGTATTTGTTGGATAGTGATTCTGGAAGGGTTTTTTGGTCTTTTTCAACTGGATCTCCAATCTACTATTCCTATCATGCTCCCATCAATAATCCTAACCACAACTTCACCGCCTTCGTTGAATGTGGAGATGATTGGGAATTAATCGTCCACGACGCTCACTTGGGTAAAAAGAGACTATCGAAATCGATTGAAGAGTATGTTGCTTCTACCCCTATCAAGACAAAGGATGGAGCATCTGTATTTGGTCACAAGAGAACCACTATGTATGTAGTTAATGCTAAAACTGGAGGGCTATACCGAACCTACTCTGAACATGATCATGCTTCTAATGCGGTGTCGAGTTATGATGACCGGCTGCATGTTGCAAGTACGAAGGATAATGTTCTTGTTGATCCTGTACAGTTGAATCCACCTGAGTACTTGCTTGAGATAACTAGGACGGATTATACTTTGCAATCCGTTGTTCCTGGTTCTGGAATAGTTTTGTGGACTATGAAAGTGGCTGAATTTAAGGCTGCATTGGTTTGTTCACATACTGAAAATCCTTCTGGAAGGATTTCATTAGATGCAGAGGATGGGTATGTTTTGGACGGTGGCTTAGATTTTGCCATGCCCTATGCATGTTGGGACATGAAACTGAATGAAGTATACCGCCAACGCAAGAAATTTTTGATAGAACCTGCTGACCCTGAGAGATTATCTGAGGTTTATGAAGAGGTTGATATGCTTCCGTTTCATAGTTCAGAGCTCATGCTTCCATCACAACCAGCTACTGATAAATTTGTTCTAGGTCGGGAGGGAATGCCGATGCTATCTTTGCCTATGCCAAATCCTTTGTCTTCTTTGCAACACAAAATTGGCTTCTATGAGGGCAATGATAATGTTCCTATGCTCCCTCGCTCTCTTATGGAGACCACTACAGAAGAAGTTGATCCAGGCAGGGTGATTAAATGGTCAAAAACAATACCTCTTGTATTATTTACCATCTTTCTTGGTTCTTTTATTATATATCATTCTCTTGTCTTTACCAATAAAGACCAGAACAGGGAGACAAATTCAAAAAGTCCACCTCCTAAGAAGAAGAAAGCTCGCAAGTCAATAAAGAACAACATTATTTCTGTCACACAGAATAAGCAATCGTTGTTGGCCCAGGAGGAGGGCACATTCAAACTTAACGAAACAAACTCCAGTACACAGGTGCAACTTGATGGACGCAGGATTGGTAAACTATTTGTATCTAATAAAGAAATTGCCAAGGGAAGCAATGGTACTGTTGTCCTTGAGGGGACATACGAAGGTCGGACAGTTGCTGTCAAACGTCTTGTTCAAAGTCATCATGATGTGGCCCATAAAGAAATCCAAAATCTCATTGCATCTGACAGGCATCCAAACATTGTCCGATGGTATGGGGTGGAATGCGATCATGATTTTGTTTACCTTGCTCTGGAACGCTGTACTTGCAACTTGGACGATTTGATTCATTCGCACTCTGATATATCAGAAAATCCAGCAGTTAGAACTTCTCAAATGAAGACAGAGGAGAATGATATGCACTATCTTTGGAAAACAAACGGTTTTCCATCACCTCTGTTACTGAAACTGATGAGGGATATAGTTTCTGGGCTTGTTCATTTGCATGAACTAGGGATAATCCATCGGGATTTGAAACCTCAAAATGTTTTGATATTAAAAGAAAGATTATTGGTTGCAAAGCTTTCTGACATGGGAATTAGCAAACGTCTTCTCGAAGATATGTCTTCTCTAGGTGAAAGTGTTACAGGCTGTGGCAGTTCAGGCTGGCAAGCACCAGAGCAACTTGTTCAAGGGCGTCAAACACGAGCTGTGGATTTATTTAGTTTAGGTTGTGTTCTCTTTTTCTGCATGACTGCGGGAAGGCATCCATTTGGAGAGCGGCTTGAGCGTGATGTCAATATTGTTAAAAATCAAAAAGATCTTTTCTTAGTGGAGTTTATTCCTGAAGCTGAGGATCTTATTTCTTGTTTGTTAAACCCTAATCCTGATCTTAGGCCAATGGCGATTGAAGTATTGCAACATCCTCTCTTTTGGAGCTCTGAGATGAGACTTTCATTTTTGCGTGATGTAAGTGATAGGGTGGAACTTGAAGATAGAGAATCCGCATCTGATCTTTTGAAGTCGTTAGAAAGCATTGCTTCACTGGCTTTAGGTGCAAAATGGGATGAGAAGTTAGATCCTGATTTCATCACTAACATTGGTCGATACCGGAGATATAAATTTGACAGCGTGCGGGACTTGTTGAGGGTCATGAGAAATAAGCTAAATCATTACAGGGAACTGCCTCAAGAAATCCAGGAACTGATTGGACCTGTCCCGGAAGGATTCAATGACTACTTTGCAAGTCGATTCCCAAGGCTCTTGATTGAAGTGTACAAAGTTATATACAGAAATTGCAAGAACGACGAATGCTTTCAAAGATATTTTAGATACATTAACTAG 2631 0.4132 MIASVLSSPFSLFLLIFLFFSLSTSQSQLLLPSSPPSVKPATALVAALDGTVYLLDSDSGRVFWSFSTGSPIYYSYHAPINNPNHNFTAFVECGDDWELIVHDAHLGKKRLSKSIEEYVASTPIKTKDGASVFGHKRTTMYVVNAKTGGLYRTYSEHDHASNAVSSYDDRLHVASTKDNVLVDPVQLNPPEYLLEITRTDYTLQSVVPGSGIVLWTMKVAEFKAALVCSHTENPSGRISLDAEDGYVLDGGLDFAMPYACWDMKLNEVYRQRKKFLIEPADPERLSEVYEEVDMLPFHSSELMLPSQPATDKFVLGREGMPMLSLPMPNPLSSLQHKIGFYEGNDNVPMLPRSLMETTTEEVDPGRVIKWSKTIPLVLFTIFLGSFIIYHSLVFTNKDQNRETNSKSPPPKKKKARKSIKNNIISVTQNKQSLLAQEEGTFKLNETNSSTQVQLDGRRIGKLFVSNKEIAKGSNGTVVLEGTYEGRTVAVKRLVQSHHDVAHKEIQNLIASDRHPNIVRWYGVECDHDFVYLALERCTCNLDDLIHSHSDISENPAVRTSQMKTEENDMHYLWKTNGFPSPLLLKLMRDIVSGLVHLHELGIIHRDLKPQNVLILKERLLVAKLSDMGISKRLLEDMSSLGESVTGCGSSGWQAPEQLVQGRQTRAVDLFSLGCVLFFCMTAGRHPFGERLERDVNIVKNQKDLFLVEFIPEAEDLISCLLNPNPDLRPMAIEVLQHPLFWSSEMRLSFLRDVSDRVELEDRESASDLLKSLESIASLALGAKWDEKLDPDFITNIGRYRRYKFDSVRDLLRVMRNKLNHYRELPQEIQELIGPVPEGFNDYFASRFPRLLIEVYKVIYRNCKNDECFQRYFRYIN 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00899 876 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1a 564 742 - -
Vian10g00899 876 SUPERFAMILY Protein kinase-like (PK-like) 456 757 IPR011009 -
Vian10g00899 876 FunFam Inositol requiring 1-1 24 235 - -
Vian10g00899 876 SMART ire1_9 123 155 IPR018391 -
Vian10g00899 876 SMART ire1_9 36 67 IPR018391 -
Vian10g00899 876 SMART serkin_6 463 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00899 876 Gene3D KEN domain 743 875 IPR038357 -
Vian10g00899 876 MobiDBLite consensus disorder prediction 399 418 - -
Vian10g00899 876 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 455 535 - -
Vian10g00899 876 ProSiteProfiles KEN domain profile. 743 874 IPR010513 GO:0004540|GO:0006397
Vian10g00899 876 PANTHER IRE1-RELATED 110 873 IPR045133 GO:0004521|GO:0004674|GO:0030968
Vian10g00899 876 Pfam Protein kinase domain 465 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00899 876 ProSiteProfiles Protein kinase domain profile. 463 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00899 876 Pfam Ribonuclease 2-5A 746 872 IPR010513 GO:0004540|GO:0006397
Vian10g00899 876 ProSitePatterns Serine/Threonine protein kinases active-site signature. 602 614 IPR008271 GO:0004672|GO:0006468
Vian10g00899 876 Gene3D Phosphorylase Kinase; domain 1 448 535 - -
Vian10g00899 876 Gene3D Transferase(Phosphotransferase) domain 1 561 742 - -
Vian10g00899 876 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 744 876 - -
Vian10g00899 876 CDD RNase_Ire1 744 872 - -
Vian10g00899 876 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 41 220 IPR011047 -
Vian10g00899 876 SMART PGNneu 805 859 - -
Vian10g00899 876 Gene3D - 20 275 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00899 Vian-Chr10 9055443 9062131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00899 489 739 MAP Kinase Kinase Kinase AT3G06030 27.843 1.45e-20 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Vian10g00899 Pkinase 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00899 K08852 - gmx:100785363 1293.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00899 10 9055443 9062131 Vian10g00899 10 9055443 9062131 ECH