Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00898 ATGAGTAAAGTTTGGCCCTTGGTTTTCATGGTTCTGTCCATTGGATGCTTTTCAAATGGGAGTGGCAGGCAAAATTCTACAGTACCAGAAGTTGTAAATATTGGGGCTCTCTTCTCTTACAATACCAGTGTTGGTAGAACTATAAAAGTTGCATTAGAAGCTGCGTTTGAAGATATAAATTCCGATCCAAATATTCTTGGTAGAACCAAGCTAAACCTCTCACTGCAAGAAGATTCTAAGTACAGAGGTTTCCTGAGCATTGCCGAGGTTTTGCAGGTCATGGCAAGACAGACAGTGGCGATAATAGGCCCCCATAGTTCTGTAACAGCTCATGTCATAACTCATATTGCAAATGAGCTCCAAGTTCCTCTTCTGTCATTTTCAGCTCTTGACCCTACTCTTTCTTCGCTTCAATTCCCATTCTTCATTAGAACTTGCCATAGTGATCTTTATCAAATGACTGCAATAGCAGACCTTGTTGACTACTATGGCTGGAAAGATGTTATCGCTGTCTTTCCTGATGATGATAATGGGAGAAATGGAATTAGCACATTAGGAGATAAGCTTGCGGAGAGGCGTTGCAAGATATCATATAAAGCAGCTTTGAGGCCCCAAGCATCTATGGAAGAGATTAGTAATGTGCTTGTTCAGGTGGCTCTGGCAGAATCACGGATAATAGTTGTTCATGGCAATACTCAACTTGGCCCCCAGGTGCTCACAGTTGCAAAGAATCTTGGGATGATGGGAACTGGTTATGTCTGGATAGCCACTTCTTTCCTCTCTGCTCTGCTTGATATTAACTATCCTCTCTCTCCTGATTCAATGGATGAAATTCAAGGAGTTCTTACACCACGTATCTACACGCTAAATTCACAGCGCAGAAGAAGTTTTGTTTCTAGGTGGAAAAACTTGACCAGGGCAAATACTGCCAATGTCAAGCTTGGATTGAGTTTTTTACCTATCTATGCATATGACACTGTTTATGCACTTGCTCATGCTCTTGATGCATTTTTCAAAGAAGGTAACCAAATTACATTCTCAACGGATTCAAAGCTGTCTAACATACATGGAAACAACTTGAATCTTGAGGCCTTGAAAATCTTTAATGAAGGAAATCTGTTACGTAGAAAGATCTATGAGGTAAACATGACTGGTGTATCAGGTCCATTCAAGTATACATCCGATAGAAACCTTGCTAATCCTGCATATGAAATCATTAATGTGATTGGAACAGGAACTCGACGGATCGGTTATTGGTCTAATCACTCTGGTTTATCAGTTGTTCCTCCAGAAACTCTTTATTCCAAACCAGTCAATCTGCCCAGGAAAAATCAAAAGCTGTTTCCTGTGATTTGGCCTGGAAACACAGATGAGAAACCTCGTGGTTGGGTTTTCCCAAACAATGGAAGGCTCTTAAAGATTGGAGTACCAAGAGGTGTTAGTTACCACGAGTTTGTCTCACAGATAAAAGGCTCTGACATGTTTGAGGGATTCTGCATTGATGTATTTCTTGCTGCAGTGAATCTCTTGCCTTATGCTGTCCCCTACAGGTTCATCTCATACGGGGATGGTAAGAACAATCCTAGTATGACTGAGCTTGTCCGTCTGATCACAACGGGTGAATTTGATGGTGCAGTAGGAGACATTGCAATTACTACAGAAAGAACAAGGATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTAGTGGTAGTAGCACCCATTGGGAAGGCAGAATCCAATGCTTTGGCCTTTTTGGCCCCTTTTACACCAAAGATGTGGTTTGTGACAGCTGCCTTTTTCATACTAGTAGGAGCTGTTGTTTGGATTTTGGAGCATAGGGTGAATGATGAATTTAGAGGACCACCCAAAAAACAAGTAATTACCGTTTTATGGTTTAGTTTTTCAACAATGTTCTTTTCCCACAGGGAAAATACAGTGAGTACACTTGGTCGTGTGGTGTTGATTATATGGTTATTTGTAGTTCTTATAATTAACTCAAGTTATACGGCAAGTCTGACCTCAATCCTCACAGTGCAACAACTTTATTCTCCCATTAAAGGCATTGAAAGTCTAGTAAACAGCAAAGTGCCTATAGGCTACACGCAGGGTTCTTTTGCAAAAAACTACTTAGTTCAGGAAATTCATATTGAGGAGTCCAGGCTAGTTCCTCTGACAACACCAGAAGAAATTGCTAAAGCACTGAAAAATGGTCCCGAAAATGGCGGTGTTGCTGCTTACATTGATGAGCGTGCCTACACTGACATCTTCCTCTCCAGCCGTTGTGATTTAAGTGTCGTAGGTCAGGAGTTCACGAGAAATGGTTGGGGATTTGCCTTCCCACGGGACTCGCCATTAGCAGTTGACCTGTCAACTGCCATATTGCAAATGATAGATAATGGAGATTTGCAAAGGATCCATGACAAATGGCTTTTGAGTAGTGCTTGCTTATCACAAGGGTCAAAGCTTGAAGTGGAAAGACTCCAACTTAAAAGCTTTTGGGGGCTCTATGCGATCTGTGGAGTTGCGTGCTTGTTTGCACTCTTCATGTATCTTATACAGATTTTGAGGCAATACCAGAAGCACTACTTAGAGGAACCTGAGTCCATTGGTGGCCAAAGCATAGGATCATCATCAAGATCTTCACGTCTCAAGACTTTCCTTTCATTTGCAGATGAGAAAGAAGAGACTGTGAAGAGCCGGTCCAAGAGAAGGAAAATGGAGAGGATCTCATACCGAAGCTCTACAGGAAGCTCATCCATCAACTCGAATAAGGAAAATGCTTCACGCAGAAGTGAATATGCTAGTGAACTATTATGA 2823 0.4166 MSKVWPLVFMVLSIGCFSNGSGRQNSTVPEVVNIGALFSYNTSVGRTIKVALEAAFEDINSDPNILGRTKLNLSLQEDSKYRGFLSIAEVLQVMARQTVAIIGPHSSVTAHVITHIANELQVPLLSFSALDPTLSSLQFPFFIRTCHSDLYQMTAIADLVDYYGWKDVIAVFPDDDNGRNGISTLGDKLAERRCKISYKAALRPQASMEEISNVLVQVALAESRIIVVHGNTQLGPQVLTVAKNLGMMGTGYVWIATSFLSALLDINYPLSPDSMDEIQGVLTPRIYTLNSQRRRSFVSRWKNLTRANTANVKLGLSFLPIYAYDTVYALAHALDAFFKEGNQITFSTDSKLSNIHGNNLNLEALKIFNEGNLLRRKIYEVNMTGVSGPFKYTSDRNLANPAYEIINVIGTGTRRIGYWSNHSGLSVVPPETLYSKPVNLPRKNQKLFPVIWPGNTDEKPRGWVFPNNGRLLKIGVPRGVSYHEFVSQIKGSDMFEGFCIDVFLAAVNLLPYAVPYRFISYGDGKNNPSMTELVRLITTGEFDGAVGDIAITTERTRMVDFTQPYIESGLVVVAPIGKAESNALAFLAPFTPKMWFVTAAFFILVGAVVWILEHRVNDEFRGPPKKQVITVLWFSFSTMFFSHRENTVSTLGRVVLIIWLFVVLIINSSYTASLTSILTVQQLYSPIKGIESLVNSKVPIGYTQGSFAKNYLVQEIHIEESRLVPLTTPEEIAKALKNGPENGGVAAYIDERAYTDIFLSSRCDLSVVGQEFTRNGWGFAFPRDSPLAVDLSTAILQMIDNGDLQRIHDKWLLSSACLSQGSKLEVERLQLKSFWGLYAICGVACLFALFMYLIQILRQYQKHYLEEPESIGGQSIGSSSRSSRLKTFLSFADEKEETVKSRSKRRKMERISYRSSTGSSSINSNKENASRRSEYASELL 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00898 940 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Vian10g00898 940 Gene3D - 50 400 - -
Vian10g00898 940 Gene3D - 759 819 - -
Vian10g00898 940 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Vian10g00898 940 PIRSF IGluLR_plant 1 938 IPR017103 -
Vian10g00898 940 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276|GO:0016020
Vian10g00898 940 SUPERFAMILY Periplasmic binding protein-like II 448 814 - -
Vian10g00898 940 Gene3D - 479 582 - -
Vian10g00898 940 CDD GluR_Plant 472 812 - -
Vian10g00898 940 Gene3D - 583 717 - -
Vian10g00898 940 Pfam Receptor family ligand binding region 50 410 IPR001828 -
Vian10g00898 940 MobiDBLite consensus disorder prediction 913 930 - -
Vian10g00898 940 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 899 IPR015683 -
Vian10g00898 940 FunFam Glutamate receptor 467 583 - -
Vian10g00898 940 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Vian10g00898 940 FunFam Glutamate receptor 583 713 - -
Vian10g00898 940 FunFam Glutamate receptor 148 306 - -
Vian10g00898 940 FunFam Glutamate receptor 709 816 - -
Vian10g00898 940 MobiDBLite consensus disorder prediction 896 940 - -
Vian10g00898 940 SUPERFAMILY Periplasmic binding protein-like I 27 464 IPR028082 -
Vian10g00898 940 Pfam Bacterial extracellular solute-binding proteins, family 3 527 812 IPR001638 -
Vian10g00898 940 Gene3D - 148 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00898 Vian-Chr10 9050223 9054283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00898 5 923 Ion Channels AT3G51480 56.957 0.0 1097
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00898 K05387 - gmx:100793320 1583.16