Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00894 ATGTCGTGTTCGTCGTCGTCGGGGTCGGAGGAAGACGATGAGGGATTCGACTCTTACCGGAAAGGAGGTTACCACGCCGTCAGAGTCGGCGATCAGTTCGGCGGCGGCAGGTACATAGCGCAGAGGAAACTGGGTTGGGGTCAGTTCTCCACCGTCTGGCTTGCTTACGATACTAAAACTTCCTCATTTGTTGCTCTCAAGATCCAGAAAAGTGCCGCCGAGTTTGTTCAGGCTGCCCTTCATGAGATTGATATTCTTTCATCCATTGCTGACCATGACCCATCAAATTCAAAATTTGTGATTCAATTGATTGACAACTTTAAGCACACTGGTCCAAATGGGCAGCATCTTTGCATGGTCCTGGGGTTTCTTGGCGATAGTTTGCTTCGCTTGATCAAATATAACCGTTACAAAGGCCTTCCATTGAATAAAGTTAGAGAGATTTGCAAATGCGTTTTAATTGGTTTGAACTACTTGCATACTGATCTTGGTATAATCCACTCTGACCTAAAACCTGAAAACATTCTTCTATGTTCAACCATTGATCCTGCCAAAGACCCTTTAAGATCTGGACTCTCTCCAATTCTAGAGCGACCTGAGGGAAACACAAATGGTGGAGTATCAAGTCTTATTGAGAAAAGGTTGAAAAGGAGAGCAAGGTCGGCAGTTGCTAAGATATCCGGAAGGAGAGGGTCAATGGGAGGAACAGAAGATGTTGCAAAGACCGGTAGAAACATTAATGGGATTGATGTGAGATGCAAGATAGTAGATTTTGGAAATGCTTGTTGGGCTGAGAAGCAGTTTGCAGAAGAAATACAGACAAGACAGTACAGAGCACCTGAAGTTGTACTGATATCTGGCTATTCTTTCCCTGTTGACATGTGGTCTTTTGCTTGCATAGCTTTTGAACTAGCCACTGGAGATATGTTGTTTACACCAAAGGGTGGACAAGGTTTTAGTGAGGATGAGGATCACCTCGCCCTGATGATGGAACTCCTTGGAAAGATGCCCCGGAAGATTGCTATTGGTGGAGCTCAGTCCAAGGATTACTTTGACAGGCATGGGGATCTAAAAAGGATTCGAAGGCTAAAATTCTGTCCACTAGACAAATTGCTGACTGATAAATATAAATTTTCAGTTAATGATGCTCAAGAGTTTTCAGAATTTCTTCTACCACTCTTTGATTTTGCCCCTGAGAAGCGACCAACTGCGAGACAGTGCCTGGAACATCCATGGCTGAAGTGCATGGAGTCCCCTCCAAATCAAACTGCTGAGGAAAAAGTGCATGTTGGAATGAGCAACCTTAAAATCTCACAGTCCAAGGCATAG 1329 0.4432 MSCSSSSGSEEDDEGFDSYRKGGYHAVRVGDQFGGGRYIAQRKLGWGQFSTVWLAYDTKTSSFVALKIQKSAAEFVQAALHEIDILSSIADHDPSNSKFVIQLIDNFKHTGPNGQHLCMVLGFLGDSLLRLIKYNRYKGLPLNKVREICKCVLIGLNYLHTDLGIIHSDLKPENILLCSTIDPAKDPLRSGLSPILERPEGNTNGGVSSLIEKRLKRRARSAVAKISGRRGSMGGTEDVAKTGRNINGIDVRCKIVDFGNACWAEKQFAEEIQTRQYRAPEVVLISGYSFPVDMWSFACIAFELATGDMLFTPKGGQGFSEDEDHLALMMELLGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFCPLDKLLTDKYKFSVNDAQEFSEFLLPLFDFAPEKRPTARQCLEHPWLKCMESPPNQTAEEKVHVGMSNLKISQSKA 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00894 442 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Vian10g00894 442 FunFam Serine/threonine-protein kinase SRPK 117 413 - -
Vian10g00894 442 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 8 204 - -
Vian10g00894 442 CDD STKc_SRPK 27 413 - -
Vian10g00894 442 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00894 442 Pfam Protein kinase domain 252 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00894 442 FunFam Protein kinase superfamily protein 24 123 - -
Vian10g00894 442 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00894 442 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00894 442 SUPERFAMILY Protein kinase-like (PK-like) 34 421 IPR011009 -
Vian10g00894 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Vian10g00894 442 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Vian10g00894 442 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00894 Vian-Chr10 9024974 9028537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00894 4 413 EF-hand Containing Proteins AT5G22840 51.288 1.33e-165 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vian10g00894 Pkinase 4.8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00894 K08832 - gmx:100784192 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00894 10 9024974 9028537 Vian10g00894 10 9024974 9028537 ECH