Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00882 ATGGATTCCTCGCCGACCAACAATACCACTTTGCTCACCAACTTACTACTCTTCAATAACACCGTCCAACCAGAGTTGATGAGGAGCCTGCATGTGTACCGGCAAGGGGATGAAGAGGAAAGGGCAGTTGAGAGGGAGTTTTTGTTTTCAGAGTGTGGATCCTATGTGGAAATGCAGGCTACCCCAATTCTTAAATTTGTGAAATCCCATGTTTCTCAAGTGTTCCAAGGGTACAAGAATGGAGTGTGGCTTTGTATCTTTGCATTTCATGATGATCACACTCCTCGATTTTGCCGCATTCCTCCGCTTTTGTTGGTCTCAAGAAACCCAAAGCTTCAGATGGTTCCAAACTTGCTCCATGATCTCCACGTGATATACAAGTTGGACAGGAAGGAGGAAGACAAAGATACAACTCTAGGATCTACAGGGGAAGAATGTCAAGGGAACAGCAACAATTTCCAACCATCAGAAAAAGTCTTTCCCGTTCTTGATCAGGATCTCAATTATCTTCCTTACGAAGAAGATGAGTCTGAGTTACTAGACAATGAGACAGATGTTGAAAGTTCACCAGGTTCCGTCAACACTCTTGCAGTTTTTTCTGCAGCTTTGCTACTATATGGACATATTGAATCTTTAGATTCGCTTGGTTTGCTAGGGAAAAAAAAGAGGGCACCCAGTGACCTGGTAGCAAAAATTTCCTTATCAGATTTGGTCCAGTACTTTGGTATGCCAATCGTAGAAGCATCAAGAAATCTAAATGTTGGGCTTACTGTTCTCAAGAGAAAGTGCAGAGAATTTGGTATTCCCCGCTGGCCTCATAGGAAGATCAAGTCACTTGATAGTCTCATTCATGATCTTCAGGAAGAGGCAAAGAGCCAAGAATTGGAGGACATGGAAGCAGCAATGGCAGTGGCCAAGAGACAAAGGATGTTGGAGTGTGAAAAGGAAAACATAGAGAAGAAGCCCTTCATGGACATTCAAACCGAAACAAAGAGGTTCAGGCAAGATGTTTTCAAGAGAAGACACAGAGCAAGAGCTGTTGGAAAACATAATTCTACAGTATCCAACACATAG 1074 0.4292 MDSSPTNNTTLLTNLLLFNNTVQPELMRSLHVYRQGDEEERAVEREFLFSECGSYVEMQATPILKFVKSHVSQVFQGYKNGVWLCIFAFHDDHTPRFCRIPPLLLVSRNPKLQMVPNLLHDLHVIYKLDRKEEDKDTTLGSTGEECQGNSNNFQPSEKVFPVLDQDLNYLPYEEDESELLDNETDVESSPGSVNTLAVFSAALLLYGHIESLDSLGLLGKKKRAPSDLVAKISLSDLVQYFGMPIVEASRNLNVGLTVLKRKCREFGIPRWPHRKIKSLDSLIHDLQEEAKSQELEDMEAAMAVAKRQRMLECEKENIEKKPFMDIQTETKRFRQDVFKRRHRARAVGKHNSTVSNT 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00882 357 Coils Coil 276 308 - -
Vian10g00882 357 ProSiteProfiles RWP-RK domain profile. 214 299 IPR003035 -
Vian10g00882 357 PANTHER PROTEIN RKD4 165 352 IPR044607 GO:0003700
Vian10g00882 357 Pfam RWP-RK domain 232 279 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00882 Vian-Chr10 8905726 8910474 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00882 22 357 AtRKD Transcription Factor Family AT4G35590 47.337 8.00e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vian10g00882 RWP-RK 1.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00882 - - gmx:113001653 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00882 10 8905726 8910474 Vian10g00882 10 8905726 8910474 ECH