Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00881 ATGGGTGTCTGTTTTTCGTCCCCCGGTGCCCACCGTTCGCCCAACTCCACATCCCCTCAAGGTTCAGCGCGTGGGAGTAGGGACTTGACAGTATCCTTGGGGAGCCTGGAAGGAAAGCGTGAAGTTTCGGAGGAGTCTGGGGTTGTCGGAAGCAGCAGTGGTTGGAGTAATAGCAACAGTAATAGCATTGTTTTTCCGAGTTTGGAAATGAGGAAGTTGAAGGAGTTTAGTTTCGCAGAGCTGAAAGCAGCTACAAAGGGTTTCAAGTCAGATGCGTTGCTTGGAGAAGGAGGTTTTGGGAAAGTTTACAAAGGATGGTTGCATAAGAAAACTCTGACACCAACCAAAGCTGGTTCTGGAATCATGGTAGCTATCAAAAAGTTGAATCCCGAAAGTATGCAGGGCCTCCAGGAGTGGCAGTCAGAAATCACGTTTTTGGGAACAGTTTCTCACCCAAACCTGGTGAAGCTTTTGGGTTACTGCTGTGACGACGTGGAATTTCTCCTTGTGTACGAATTCATGCCAAAGGGAAGCTTGGAGACTCATCTATTTTGGAGAAATACTAACACAGAACCTTTGTCTTGGGACACTCGACTGAAAATAGCTATTGGTGCAGCTCGGGGTTTGGCTTACTTGCACACCTCAGATAAGCAAATCATATACAGAGATTTCAAAGCCTCCAATATATTACTTGATGAGGAATTCAACGCGAAAATATCAGATTTTGGTTTGGCGAAACTAGGCCCTTCTGCGGGAGATTCACACGTGACAACGAGAATCATAGGAACATATGGTTATGCTGCTCCAGAATACATTGCAACAGGTCACCTATATGTGAAAAGTGATGTTTATGGATTTGGTGTGGTGCTGCTTGAAATGCTGAAAGGGATGAGAGCACTTGATCAAAAGCGGCCTTCAGGGCAGCAGAATCTGGTTGAATGGATTAAGCCTTATCTGTCTGATAAAAGTAAGTTGAAAAGTGATATTATGGATGAGAAGATTGTAGGTCAGTATTCAACAAATGCAGCACTCAAAGCAGCACGGCTTACTCTAAAATGCCTTCAAACTGACCCTAAACTACGTCCTTCTATGCAACAAGTTCTACACACATTGGAAACCATCCAAGCTATCAAACTTAGAACGAGGAAAAGAACCAAACATTTCCCAACTATCAACAATTTCCATTAG 1188 0.4411 MGVCFSSPGAHRSPNSTSPQGSARGSRDLTVSLGSLEGKREVSEESGVVGSSSGWSNSNSNSIVFPSLEMRKLKEFSFAELKAATKGFKSDALLGEGGFGKVYKGWLHKKTLTPTKAGSGIMVAIKKLNPESMQGLQEWQSEITFLGTVSHPNLVKLLGYCCDDVEFLLVYEFMPKGSLETHLFWRNTNTEPLSWDTRLKIAIGAARGLAYLHTSDKQIIYRDFKASNILLDEEFNAKISDFGLAKLGPSAGDSHVTTRIIGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEMLKGMRALDQKRPSGQQNLVEWIKPYLSDKSKLKSDIMDEKIVGQYSTNAALKAARLTLKCLQTDPKLRPSMQQVLHTLETIQAIKLRTRKRTKHFPTINNFH 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00881 395 Gene3D Transferase(Phosphotransferase) domain 1 174 391 - -
Vian10g00881 395 Gene3D Phosphorylase Kinase; domain 1 72 173 - -
Vian10g00881 395 MobiDBLite consensus disorder prediction 1 56 - -
Vian10g00881 395 FunFam Serine/threonine-protein kinase PBS1 174 388 - -
Vian10g00881 395 Pfam Protein tyrosine and serine/threonine kinase 91 371 IPR001245 GO:0004672|GO:0006468
Vian10g00881 395 FunFam Serine/threonine-protein kinase BIK1 55 173 - -
Vian10g00881 395 ProSitePatterns Protein kinases ATP-binding region signature. 94 127 IPR017441 GO:0005524
Vian10g00881 395 MobiDBLite consensus disorder prediction 9 29 - -
Vian10g00881 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Vian10g00881 395 ProSiteProfiles Protein kinase domain profile. 88 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00881 395 SUPERFAMILY Protein kinase-like (PK-like) 67 378 IPR011009 -
Vian10g00881 395 CDD STKc_IRAK 94 374 - -
Vian10g00881 395 PANTHER OS01G0588500 PROTEIN-RELATED 53 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00881 Vian-Chr10 8900635 8903446 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00881 76 371 Glycoside Hydrolase AT3G07070 48.822 1.02e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vian10g00881 PK_Tyr_Ser-Thr 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00881 - - gmx:100778116 568.54