Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00880 ATGGGTCTCTGCTTTTCTTCCTGCGCTCCTCGCCAAACACCCTCTAATTCTCTTCACTATTCTGGTTCAGGGCGTGAAGGCGAAAGTGTTAATGGAGGAAGCAGTAGCATTAGCAGTATCAGTGGGAACAACGTTGTGTTTCCGAGTGTGGAAACAAGGAACTTGAAGCAGTTCAATTTTGCAGAGCTGAAAGCTGCAACCAAGGGTTTCAGATCTGATACACTGCTTGGAGAAGGGGGTTTTGGGAAAGTTTACAAAGGGTGGTTGCATGAGGAGACATTGACACCAGCCAAAGCTGGATCTGGAATGGTGGTTGCTGTTAAGAAATTGAACTCAGAGAGCGTGCAGGGATTTCGAGAGTGGCAGTCTGAAATCAATTTTTTAGGAAGAGTTTCTCACCAAAACCTGGTGAAGCTTTTGGGTTACTGTTGTGACGATGTGGAATTTCTACTTGTGTACGAGTTCATGCCAAAGGGAAGCTTGGAGGATCATCTCTTTAGAAGAAATACGAACACAGAACCACTGTCTTGGGACACCAGACTCAAAATAGCTATTGGTGCAGCTAGAGGCTTGGCTTTCTTACACACCTCAGAAAAGCAAATCATATACAGAGATTTCAAAGCCTCAAATATACTACTTGATGAGGATTACAATGCAAAAATTTCAGATTTTGGTTTGGCCAAATTAGGCCCTTCTGGGGGAGTTTCACACGTGACTACCAGGATCATGGGCACATATGGCTATGCTGCTCCAGAATACATTGCAACAGGACACTTGTATGTGAAGAGTGATGTTTATGGTTTTGGTGTAGTGCTGCTTGAAATTCTTACAGGGTTGCGGGCACTTGATAGAAACCGACCCTTGGAGCAGCAGAATCTAATTGAATGGGCTAAGCCTTCTCTGTCTGATAAAAGAAAGTTGAAAAGCATAATGGATGAGAGAATAGAGGGTCAGTATTCAACCAAGGCAACAATGAAAGCAGCACATTTAACTCTTAAATGCCTTCAACGTGACCATAGAAAACGTCCTCCCATGAAAGATGTTCTGGAAACATTGGAACGCATAGAACTTATAAAGGATAGAAGGAAATAA 1092 0.4304 MGLCFSSCAPRQTPSNSLHYSGSGREGESVNGGSSSISSISGNNVVFPSVETRNLKQFNFAELKAATKGFRSDTLLGEGGFGKVYKGWLHEETLTPAKAGSGMVVAVKKLNSESVQGFREWQSEINFLGRVSHQNLVKLLGYCCDDVEFLLVYEFMPKGSLEDHLFRRNTNTEPLSWDTRLKIAIGAARGLAFLHTSEKQIIYRDFKASNILLDEDYNAKISDFGLAKLGPSGGVSHVTTRIMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEILTGLRALDRNRPLEQQNLIEWAKPSLSDKRKLKSIMDERIEGQYSTKATMKAAHLTLKCLQRDHRKRPPMKDVLETLERIELIKDRRK 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00880 363 Pfam Protein tyrosine and serine/threonine kinase 74 352 IPR001245 GO:0004672|GO:0006468
Vian10g00880 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Vian10g00880 363 ProSitePatterns Protein kinases ATP-binding region signature. 76 109 IPR017441 GO:0005524
Vian10g00880 363 PANTHER OS01G0588500 PROTEIN-RELATED 40 355 - -
Vian10g00880 363 ProSiteProfiles Protein kinase domain profile. 70 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00880 363 Gene3D Transferase(Phosphotransferase) domain 1 156 362 - -
Vian10g00880 363 MobiDBLite consensus disorder prediction 1 36 - -
Vian10g00880 363 FunFam Serine/threonine-protein kinase PBS1 156 363 - -
Vian10g00880 363 SUPERFAMILY Protein kinase-like (PK-like) 38 352 IPR011009 -
Vian10g00880 363 MobiDBLite consensus disorder prediction 8 36 - -
Vian10g00880 363 FunFam Serine/threonine-protein kinase BIK1 38 155 - -
Vian10g00880 363 CDD STKc_IRAK 76 355 - -
Vian10g00880 363 Gene3D Phosphorylase Kinase; domain 1 43 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00880 Vian-Chr10 8892384 8895087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00880 56 352 Glycoside Hydrolase AT3G07070 50.000 1.34e-102 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vian10g00880 PK_Tyr_Ser-Thr 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00880 - - gmx:100777578 612.453