Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00875 ATGGAAAAGGAGAACCCTTCTTTGGGTCCATTCTTCAAGAAATCTCTATCTGCTCCCTCTGGTGACACCCTCACTCTAATCATCAATCGGCAGGGTGAAAGCACCATGAAAACCCCTTGGCAAGTGTTGGATGAACTGCGTGATGAAAGTAGTGATGACGGTGAAAATGACGTTGGTGGTGGGAGTGGTAATCACAGAAGAGGGAAGAGTGGTGTTGGTGGTGGAAGTGGTGACCATAATAACAATGGAGTTCGTGGCCGGATTGGTGGTGAGAATGGTAATGGTGGTGAGAATGGTAATGGGATTCCTCCTGTGGCTGTGGCGGTGGCTGTGGCAGTGGGTGGTGGTGGTGGTAAGGTGGAGCTGGTGGAGAGTGGTGTTGTGAAGGAGGGAGTGATGGGGAAAAAGAGAAAGACTTCTATAGTGAGGGACCCTCCCTCTGGGAAACCTACTTGTCCTCTTTGCCTCAAACAGTTTCCAACATGGAAGGGTGCGTTTGGCCACATGCGGGCACACCCTGATCGTGATTATCGTGGTTTCTTCAAACCTCCTGTGTTTGGATCCCCATCCTCAACCCAACACCATACCCTTAACAAGGGTAACACCTCACAGAGTGGTGATGGTGAAAACAAGAGTACTGGTGAGGTTAACCGTGGAGAGAAAGGGTCAACATCGCTGCCTATTCAAGTGCTGATGTTTGATCTGAATGAACCAGCAACTGCAGTGGAGAATGCTGGTGAGGCTGTTACAGAAAAGAGTGCTGAGAATGGAAAGATTTTTGGATTTGACTTGAATGCTGAGGGAACTGTTTTTGGATTTGACTTGAACGAGATGCCCTTGGCTGAAGAATGA 852 0.4871 MEKENPSLGPFFKKSLSAPSGDTLTLIINRQGESTMKTPWQVLDELRDESSDDGENDVGGGSGNHRRGKSGVGGGSGDHNNNGVRGRIGGENGNGGENGNGIPPVAVAVAVAVGGGGGKVELVESGVVKEGVMGKKRKTSIVRDPPSGKPTCPLCLKQFPTWKGAFGHMRAHPDRDYRGFFKPPVFGSPSSTQHHTLNKGNTSQSGDGENKSTGEVNRGEKGSTSLPIQVLMFDLNEPATAVENAGEAVTEKSAENGKIFGFDLNAEGTVFGFDLNEMPLAEE 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00875 283 MobiDBLite consensus disorder prediction 28 99 - -
Vian10g00875 283 ProSitePatterns Zinc finger C2H2 type domain signature. 152 172 IPR013087 -
Vian10g00875 283 MobiDBLite consensus disorder prediction 1 20 - -
Vian10g00875 283 MobiDBLite consensus disorder prediction 186 223 - -
Vian10g00875 283 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 135 200 - -
Vian10g00875 283 MobiDBLite consensus disorder prediction 181 223 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00875 144 199 C2H2 Transcription Factor Family AT4G35280 41.379 4.75e-08 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian10g00875 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00875 - - pvu:PHAVU_002G115500g 372.089