Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00866 ATGGGAGGTGACGCAACAACAACTGAGAGTGCCACATCGGAGTTGAACGCCGCGGAAGTCAACATCAATATTCGTTGTTCAAATGGCTCAAAGTTTTCTGTTCAGATTAGTCTCGATTCCGTGGTCAGATCTTTCAAAGACGTCGTGGCTCGCAGCTGTGACATCCCCGCTGATCAACAGCGTCTGATTTACAAGGGTCGGATCCTTAAGGATGATCAGACACTCCAAAGCTACGGTTTGGAGGCTGATCACACTGTCCATTTGGTTCGTGGCTTTGCTCCTAACAACAACACTGGTGGGGCTAATAGTGGTGGTGCCAATACCACCACAGCCAATACCACGAGAGGTGCTGGTGCTAATGAGGGTGGGGGTTTAGGAGGGCCAGGATTTGGGGCTTCACTCTTTCCTGGACTTAGTGGTAACAATGGGATGGGGGGCAGTGGCCTCAATGGCTTATTTGGAGCGGGCTTTCCGGACCTTGAACAAATGCAGCAACCGTTTTTGTCAAACCCCAATTTAGTGAGAGATATAATGAACACACCTGCTATGCAGAATTTAATAAATAATCCAGAGATAGTGCGGAATCTTATAATGAATAATCCGCAGATGCAAGAGTTAATGGATAGAAACCCTGAGCTGGCTCACATACTTAATGATCCCAGCACTCTTCGTCAGACACTTGAAGCTACAAGGAACCCTGAGATCATGCGCGAAATGATGAGGAATACAGACAGAGCAATGAGCAACATCGAATCTTCTCCTGAGGGATTTAACATGCTGAGACGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACGACAATGGCTGGTAATGCCGGAAATGACGGTGCAGCGGCTAGGAACCAATCAACTAATCCCTCCACTGCTAATTCTGAAGCAACTTCCCCTGTACCCAATACGAACCCACTTCCTAATCCATGGTCCTCTACTGGAACTGGAGGTGGTCAAAATAACACCAGAAGGTCAACTCCTGCTGGTGGGGATGCTCGACAGCAGGCACCCACTGGATTAGGAGGGCTTGGACTGCCTGATCTTGAAGGCATGTTGGGTGGAATGCCGGATGCTGCTATGTTGACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACTATGAATCAGATTCTTGGGGTCAATTCTGAGCAGCGTGGCATGCCTGATATAAATTCTCTAAGGGAGGTTATGCAAAACCCAGAGTTTTTACGACTGTTTTCCTCACCCGAGACACTGCAGCAACTCTTGTCTTTCCAGCAAGCTCTTCTGTCTCAGATTGGTCAGCAACAATCAACACAGGAACCAGGTCAAACAGGAGGAGGCACTGGACCGTTGAACAACATGGGACTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTTGCTGTTCCTAACAGATCAAATGAGCCACCAGAGCAATTGTATGCCACCCAACTTTCTCAGCTTCAAGAGATGGGGTTCTTTGACACGCAAGAGAACATAAGGGCTCTTATTGCCACATCAGGGAACGTTCACGCAGCAGTTGAGCGGCTTTTGGGGAACTCCGGACAGTAG 1614 0.4771 MGGDATTTESATSELNAAEVNINIRCSNGSKFSVQISLDSVVRSFKDVVARSCDIPADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPNNNTGGANSGGANTTTANTTRGAGANEGGGLGGPGFGASLFPGLSGNNGMGGSGLNGLFGAGFPDLEQMQQPFLSNPNLVRDIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNAGNDGAAARNQSTNPSTANSEATSPVPNTNPLPNPWSSTGTGGGQNNTRRSTPAGGDARQQAPTGLGGLGLPDLEGMLGGMPDAAMLTQLMQNPAISQMMQSILSNPQTMNQILGVNSEQRGMPDINSLREVMQNPEFLRLFSSPETLQQLLSFQQALLSQIGQQQSTQEPGQTGGGTGPLNNMGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00866 537 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 489 534 IPR015940 -
Vian10g00866 537 MobiDBLite consensus disorder prediction 442 460 - -
Vian10g00866 537 SMART CBM 200 239 IPR006636 -
Vian10g00866 537 SMART CBM 146 187 IPR006636 -
Vian10g00866 537 SMART CBM 351 393 IPR006636 -
Vian10g00866 537 SMART CBM 396 431 IPR006636 -
Vian10g00866 537 FunFam Ubiquitin domain-containing protein DSK2b 17 103 - -
Vian10g00866 537 Gene3D - 195 253 - -
Vian10g00866 537 PANTHER UBIQUILIN 16 532 IPR015496 -
Vian10g00866 537 SUPERFAMILY Ubiquitin-like 13 103 IPR029071 -
Vian10g00866 537 Pfam UBA/TS-N domain 495 531 IPR015940 -
Vian10g00866 537 SMART ubq_7 20 91 IPR000626 GO:0005515
Vian10g00866 537 ProSiteProfiles Ubiquitin domain profile. 20 89 IPR000626 GO:0005515
Vian10g00866 537 CDD Ubl_Dsk2p_like 20 92 - -
Vian10g00866 537 Gene3D - 477 537 - -
Vian10g00866 537 Gene3D - 7 104 - -
Vian10g00866 537 SUPERFAMILY UBA-like 491 533 IPR009060 GO:0005515
Vian10g00866 537 MobiDBLite consensus disorder prediction 442 464 - -
Vian10g00866 537 MobiDBLite consensus disorder prediction 96 123 - -
Vian10g00866 537 CDD UBA_PLICs 495 533 - -
Vian10g00866 537 SMART uba_6 495 533 IPR015940 -
Vian10g00866 537 MobiDBLite consensus disorder prediction 96 117 - -
Vian10g00866 537 FunFam Ubiquitin domain-containing protein DSK2b 197 253 - -
Vian10g00866 537 Pfam Ubiquitin family 22 89 IPR000626 GO:0005515
Vian10g00866 537 MobiDBLite consensus disorder prediction 275 338 - -
Vian10g00866 537 MobiDBLite consensus disorder prediction 275 353 - -
Vian10g00866 537 FunFam Ubiquitin domain-containing protein DSK2b 478 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00866 Vian-Chr10 8695104 8700564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00866 20 89 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 5.80e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00866 K04523 - gmx:100797539 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00866 10 8695104 8700564 Vian10g00866 10 8695104 8700564 ECH