LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian10g00864	ATGGTCATATCAGATGAGAACAGATCTAAATCAGTGAACCCCACAAGTTTTCAAGGAGGGATGAATTGTGGGGGAAACAGAAAGGTGGGGCAAAACAGAAGGGCGTTGAGCGTGATCAATCAGGATCTGGTGGCGGAAGGGAGACCTTACCCTTGTGTTGTTAACAAGAGAACATTGGCAGAAAAACAAGATGTGTGTGAGAAGAAGCAGGCGGATCCGGTGCATCGACCCATCACAAGGAGGTTTGCTGCACAGATTGCCAGCACACAGCAAAATCGTGCTGAGGGAACCAAGAAGTCAAACTTGGGAAATTCAAATTCGAATGGATTTGGAGAGGTTATATTTGTTGATGATGAACACAAGCCAACGGATGACCAACCAGTGCCAATGACTTTAGAGCAGACAGAGCCAGTGAATAATGAATTAGATCAGATGGAGGAAGTTGAGATGGAGGATATAATTGATGAGACAGTTTTGGACATTGATATATGTGACGCAAATAATCCCCTTGCAGTGGTGGACTATATAGAAGATCTTTACGCCTACTACAGAAAAATGGAGGGTTCTAGCTGTGTCTCATCCGATTATATGACACAGCAGTTTGACATTAATGAAAGGATGAGGGCTATACTTATTGACTGGCTTATTGAGGTGCACGACAAATTTGACCTCATGCACGAGACATTGTTTCTCACAGTTAATCTCATAGATAGATTTTTGGCAAAGCAGACAGTTGTAAGAAAGAAGCTTCAGTTGGTTGGACTAGTTGCAATGCTTCTGGCATGCAAGTATGAAGAAGTTTCAGTTCCTGTGGTGGGGGATCTAATTCTCATATCAGACAAAGCATACACAAGGAAGGAAGTTCTGGAGATGGAGAAGTTGATGGTCAACACATTGCAGTTTAACATGTCTGTGCCAACAGCATATGTTTTTATGAAAAGATTCCTAAAGGCAGCTCAAGCAGACAGGAAGCTTGAGCTATTGGCTTTCTTCCTAGTAGAGCTATCTCTAGTGGAATATGAGATGCTGAAGTTCCCTCCATCCTTGCTAGCAGCAGCTGCTATTTATACAGCTCAATGCTCCATTTATGGCTTGAAACAATGGAGTAAAACATGTGAATGGCACTCCAATTACTCAGAAGATCAGCTATTAGAGTGCTCTACCTCGATGGTTGATTTTCATCAGAAGGCTGGAAAAGGGAAACTTACTGGGGTACATAGGAAGTACTGTTCATCTAAATTTAACTACACTGCAAAATGTGAACCCGCACATTTTCTTCTGGAGGACTCGTTGTAG	1296	0.4244	MVISDENRSKSVNPTSFQGGMNCGGNRKVGQNRRALSVINQDLVAEGRPYPCVVNKRTLAEKQDVCEKKQADPVHRPITRRFAAQIASTQQNRAEGTKKSNLGNSNSNGFGEVIFVDDEHKPTDDQPVPMTLEQTEPVNNELDQMEEVEMEDIIDETVLDIDICDANNPLAVVDYIEDLYAYYRKMEGSSCVSSDYMTQQFDINERMRAILIDWLIEVHDKFDLMHETLFLTVNLIDRFLAKQTVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMEKLMVNTLQFNMSVPTAYVFMKRFLKAAQADRKLELLAFFLVELSLVEYEMLKFPPSLLAAAAIYTAQCSIYGLKQWSKTCEWHSNYSEDQLLECSTSMVDFHQKAGKGKLTGVHRKYCSSKFNYTAKCEPAHFLLEDSL	431

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian10g00864	431	Gene3D	-	192	304	-	-
	Vian10g00864	431	MobiDBLite	consensus disorder prediction	1	22	-	-
	Vian10g00864	431	CDD	CYCLIN_AtCycB-like_rpt2	306	422	-	-
	Vian10g00864	431	Pfam	Cyclin, N-terminal domain	178	304	IPR006671	-
	Vian10g00864	431	SMART	Cyclin_C_2	306	423	IPR004367	-
	Vian10g00864	431	FunFam	G2/mitotic-specific cyclin-1	293	418	-	-
	Vian10g00864	431	SUPERFAMILY	Cyclin-like	167	303	IPR036915	-
	Vian10g00864	431	Gene3D	-	178	418	-	-
	Vian10g00864	431	PANTHER	CYCLINS	125	396	IPR039361	-
	Vian10g00864	431	Pfam	Cyclin, C-terminal domain	306	421	IPR004367	-
	Vian10g00864	431	PIRSF	Cyclin_A_B_D_E	24	431	IPR046965	GO:0016538\|GO:0044772
	Vian10g00864	431	SMART	cyclin_7	213	297	IPR013763	-
	Vian10g00864	431	SMART	cyclin_7	310	392	IPR013763	-
	Vian10g00864	431	MobiDBLite	consensus disorder prediction	1	28	-	-
	Vian10g00864	431	CDD	CYCLIN_AtCycB-like_rpt1	156	301	-	-
	Vian10g00864	431	ProSitePatterns	Cyclins signature.	208	239	IPR006671	-
	Vian10g00864	431	MobiDBLite	consensus disorder prediction	88	107	-	-
	Vian10g00864	431	SUPERFAMILY	Cyclin-like	305	423	IPR036915	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian10g00864	Vian-Chr10	8660866	8663398	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian10g00864	1	427	Core Cell Cycle Gene Families	AT1G20610	58.295	1.37e-175	496

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian10g00864	K21777		-	gmx:100798068	773.081