Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian10g00861 | ATGCTATATTCAGGACCACTTCACTGCTATAGCATGACAACACTGGGGATGGATCGACATTTCTCCTACAGCATATCTCTGTCCGGAGAAAATGACATCAATGTTCTGATGCCTGGAGCTCTTTTCAGATTCACCATTAGAGTTTTTTATGAAAATACTTCAATTCCAGAACTAGGTCGCTCTTCTACTCTTATATCGATCCAAACCTTTTTCCAAGAAGGTCCAGATTTCTTGCGGACACTGTTACGGCCACTGTCATCATCGAGGACACTGTTATCGCCACTGTTATCGTTTAGACCTTTCTGCACTCACATAATTCAAACAATAGTAAACGTCACTGCTAATCAAATTCGAGAAATCTTCCAAATCGATGCTGCTGCTGCGGCTTCTTCTTCGGAATCTCAACACCAAGAAGTTTCTCTATGGATTGTGATCAATGTTACTGATAACAACATGCATGCAGCAACACAAGATCCTTTAAGAACGGTTGTGGCATCCGAAGAAGCCATTGACACGTTGTTGAAGAAATCTACGGTATCACGGACTGAGTGTTGTTGTTGCATATGTTTGGATGAATTCGATCTTAATGCGGAGTGCTACACACTTCCATGTCAACACTTCTTTCATCAAAAATGTATCACGCCCTGGCTACGCACCAATCAGACCTGCCCCATGTGTCGTCAAAATCTGCGAACCCTAAAAGACTAG | 708 | 0.4237 | MLYSGPLHCYSMTTLGMDRHFSYSISLSGENDINVLMPGALFRFTIRVFYENTSIPELGRSSTLISIQTFFQEGPDFLRTLLRPLSSSRTLLSPLLSFRPFCTHIIQTIVNVTANQIREIFQIDAAAAASSSESQHQEVSLWIVINVTDNNMHAATQDPLRTVVASEEAIDTLLKKSTVSRTECCCCICLDEFDLNAECYTLPCQHFFHQKCITPWLRTNQTCPMCRQNLRTLKD | 235 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian10g00861 | 235 | Pfam | Ring finger domain | 186 | 227 | IPR001841 | - | |
| Vian10g00861 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 147 | 232 | IPR013083 | - | |
| Vian10g00861 | 235 | SMART | ring_2 | 186 | 226 | IPR001841 | - | |
| Vian10g00861 | 235 | PANTHER | TARGET OF ERK KINASE MPK-1 | 119 | 231 | - | - | |
| Vian10g00861 | 235 | CDD | RING-H2_PA-TM-RING | 185 | 227 | - | - | |
| Vian10g00861 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 186 | 227 | IPR001841 | - | |
| Vian10g00861 | 235 | SUPERFAMILY | RING/U-box | 185 | 232 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian10g00861 | Vian-Chr10 | 8629639 | 8633097 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vian10g00861 | 186 | 230 | C3H Transcription Factor Family | AT1G68070 | 51.111 | 5.38e-12 | 62.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian10g00861 | - | K19039 | vum:124843592 | 353.599 |