Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00861 ATGCTATATTCAGGACCACTTCACTGCTATAGCATGACAACACTGGGGATGGATCGACATTTCTCCTACAGCATATCTCTGTCCGGAGAAAATGACATCAATGTTCTGATGCCTGGAGCTCTTTTCAGATTCACCATTAGAGTTTTTTATGAAAATACTTCAATTCCAGAACTAGGTCGCTCTTCTACTCTTATATCGATCCAAACCTTTTTCCAAGAAGGTCCAGATTTCTTGCGGACACTGTTACGGCCACTGTCATCATCGAGGACACTGTTATCGCCACTGTTATCGTTTAGACCTTTCTGCACTCACATAATTCAAACAATAGTAAACGTCACTGCTAATCAAATTCGAGAAATCTTCCAAATCGATGCTGCTGCTGCGGCTTCTTCTTCGGAATCTCAACACCAAGAAGTTTCTCTATGGATTGTGATCAATGTTACTGATAACAACATGCATGCAGCAACACAAGATCCTTTAAGAACGGTTGTGGCATCCGAAGAAGCCATTGACACGTTGTTGAAGAAATCTACGGTATCACGGACTGAGTGTTGTTGTTGCATATGTTTGGATGAATTCGATCTTAATGCGGAGTGCTACACACTTCCATGTCAACACTTCTTTCATCAAAAATGTATCACGCCCTGGCTACGCACCAATCAGACCTGCCCCATGTGTCGTCAAAATCTGCGAACCCTAAAAGACTAG 708 0.4237 MLYSGPLHCYSMTTLGMDRHFSYSISLSGENDINVLMPGALFRFTIRVFYENTSIPELGRSSTLISIQTFFQEGPDFLRTLLRPLSSSRTLLSPLLSFRPFCTHIIQTIVNVTANQIREIFQIDAAAAASSSESQHQEVSLWIVINVTDNNMHAATQDPLRTVVASEEAIDTLLKKSTVSRTECCCCICLDEFDLNAECYTLPCQHFFHQKCITPWLRTNQTCPMCRQNLRTLKD 235
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00861 235 Pfam Ring finger domain 186 227 IPR001841 -
Vian10g00861 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 232 IPR013083 -
Vian10g00861 235 SMART ring_2 186 226 IPR001841 -
Vian10g00861 235 PANTHER TARGET OF ERK KINASE MPK-1 119 231 - -
Vian10g00861 235 CDD RING-H2_PA-TM-RING 185 227 - -
Vian10g00861 235 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Vian10g00861 235 SUPERFAMILY RING/U-box 185 232 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vian10g00861 Vian-Chr10 8629639 8633097 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00861 186 230 C3H Transcription Factor Family AT1G68070 51.111 5.38e-12 62.8