Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00860 ATGGGCACTGGCCTCACTACTCTCATGCCTGCAGCTATTTTCAGATTCAGCATGAGAGTTTTTTCTCAATTAGTTCCACTTCAACTACAAGGTCCTCCTTTTACTCTTATACCGAGCCAAACCTTGTTCCAAGAGGGTCCAGATTTCTTGCGGACACTGTTTTCGCCACTGTTATCACTGTCATCACCGTTATCGCCACCCTCATCGCTTAGACTCTTCGACACTGACATTATTGAAACACTGGTAAACATGGGTGCTGATGAAATTCGAAGAATCTTTCACATTGATGATCATGCCGTTACTTCTTCAGAATCTCAACCCCCAGAAATTCCTCTCTGGATTGTAATTAATGTTACTGAAAACAGCATTCATGCAACAACACAATATCTTTTAAGAATGGTTCCAGCAGCCGAAAAACTCGTTGACACGTTGTTGAAGAAATCTACGATGTTACGGACTGAGTGTTGTTGCATATGCTTGGATGAATTTGATCTCAATGTTGAATGCTACACACTTCCATGTCGACACTTCTTTCATCAAAACTGTATTACGCGCTGGCTACAAACCCATCAGACCTGTCCCATGTGTCGCCAACCTTTGCGAATCCTAAAAGACTAG 618 0.4239 MGTGLTTLMPAAIFRFSMRVFSQLVPLQLQGPPFTLIPSQTLFQEGPDFLRTLFSPLLSLSSPLSPPSSLRLFDTDIIETLVNMGADEIRRIFHIDDHAVTSSESQPPEIPLWIVINVTENSIHATTQYLLRMVPAAEKLVDTLLKKSTMLRTECCCICLDEFDLNVECYTLPCRHFFHQNCITRWLQTHQTCPMCRQPLRILKD 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00860 205 SUPERFAMILY RING/U-box 143 202 - -
Vian10g00860 205 SMART ring_2 156 196 IPR001841 -
Vian10g00860 205 Pfam Ring finger domain 156 197 IPR001841 -
Vian10g00860 205 ProSiteProfiles Zinc finger RING-type profile. 156 197 IPR001841 -
Vian10g00860 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 202 IPR013083 -
Vian10g00860 205 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 99 197 - -
Vian10g00860 205 CDD RING-H2_PA-TM-RING 155 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00860 Vian-Chr10 8599915 8600532 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00860 122 200 C3H Transcription Factor Family AT1G18760 39.024 9.46e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00860 - - vum:124843592 245.743