Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00859 ATGACAGTATTGGGGATGAATCGACGTTTTTCCTACAATATATCTCTGTCCGGAGAAAATGACATCAATGATCTGATGCCGACAGCTCTTTTCAGATTCAAAATTAGAGTTTTTTATGAAAGTACTTCAGTTCCAGCAGAAAGTATCAAAGAGTGTAATCATGTCAGCACCAGCACAACCACACTCTTCGACACTACCATTATTGACAGACTAGTAAACACGGTTGCTAATGAAATTCGAGGAATCTTTCATATTGATGATCATGCTACTACTTCTTCGGAATCTCAACCCTCAGAAATTCCTCTGTGGATTGTAATCAATGTTACAGATAGCAGCATGCATACAGCAACACAATATCCTTTAAGAACGGTTCCAGCAGCCAAAGAACCCATTGACACGTTGTTGAAGAAATCTACGGTGTTACAGACTAAGTGTTGTTGTTGCATATGCTTGGATGAATTCGATCTCAATGCTGAGTGCTACACACTTCCATGTCAACACTTTTTTCATCAAAAATGTATTACGCGCTGGCTACACACCAGTCAGACCTGTCCCATGTGTCGTCAACCTCTGCAAACTCTAAAAGACTAG 591 0.401 MTVLGMNRRFSYNISLSGENDINDLMPTALFRFKIRVFYESTSVPAESIKECNHVSTSTTTLFDTTIIDRLVNTVANEIRGIFHIDDHATTSSESQPSEIPLWIVINVTDSSMHTATQYPLRTVPAAKEPIDTLLKKSTVLQTKCCCCICLDEFDLNAECYTLPCQHFFHQKCITRWLHTSQTCPMCRQPLQTLKD 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00859 196 ProSiteProfiles Zinc finger RING-type profile. 147 188 IPR001841 -
Vian10g00859 196 SUPERFAMILY RING/U-box 146 193 - -
Vian10g00859 196 CDD RING-H2_PA-TM-RING 146 188 - -
Vian10g00859 196 PANTHER TARGET OF ERK KINASE MPK-1 116 193 - -
Vian10g00859 196 SMART ring_2 147 187 IPR001841 -
Vian10g00859 196 Pfam Ring finger domain 147 188 IPR001841 -
Vian10g00859 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 193 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00859 Vian-Chr10 8588466 8595434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00859 71 188 C3H Transcription Factor Family AT3G15740 27.273 7.43e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00859 - K19039 vum:124843592 281.182