Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00858 ATGAAACTTGTGGTGCAGCAAAATGAAGATTGTCGTTTAGGAGAAAATGAAGGACCATTCTACGGCATGAGAATGTTTGGGATGAATCAAAGTTTGTACAGCATAACCATCATGGGCACTGGCCTCACTACTCTCATGCCTGCAGCTATTTTCAGATTCAGCATGAGAGTTTTTTCTCAATTAGTTCCACTTCAACTACAAGGTCCTCCTTTTACTCTTATACCGAGCCAAACCTTGTTCCAAGAGGGTCCAGATTTCTTGCGGACACTGTTTTCGCCACTGTTATCACTGTCATCACCGTTATCGCCACCCTCATCGCTTAGACTCTTCGACACTGACATTATTGAAACACTGGTAAACATGGGTGCTGATGAAATTCGAAGAATCTTTCACATTGATGATCATGCCGCTACTTCTTCAGAATCTCAACCCCCAGAAATTCCTCTCTGGATTGTAATCAATGTTACTGAAAACAGCCTTCATGCAACAACACAATATCTTTTAAGAATGGTTCCAGCAGTCGAAAAACTCGTTGACACGTTGTTGAAGAAATATACGATGTTACAGACTGAGTGTTGTTGCATATGCTTGGATGAATTTGATCTCAATGTTGAATGCTACACACTTCCATGTCGACACTTCTTTCATCAAAACTGTATTACGCGCTGGCTACAAACCCATCAGACCTGTCCCATGTGTCGCCAACCTCTGCGAACCCTAAAAGACTAG 729 0.4211 MKLVVQQNEDCRLGENEGPFYGMRMFGMNQSLYSITIMGTGLTTLMPAAIFRFSMRVFSQLVPLQLQGPPFTLIPSQTLFQEGPDFLRTLFSPLLSLSSPLSPPSSLRLFDTDIIETLVNMGADEIRRIFHIDDHAATSSESQPPEIPLWIVINVTENSLHATTQYLLRMVPAVEKLVDTLLKKYTMLQTECCCICLDEFDLNVECYTLPCRHFFHQNCITRWLQTHQTCPMCRQPLRTLKD 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00858 242 ProSiteProfiles Zinc finger RING-type profile. 193 234 IPR001841 -
Vian10g00858 242 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 136 234 - -
Vian10g00858 242 CDD RING-H2_PA-TM-RING 192 234 - -
Vian10g00858 242 SMART ring_2 193 233 IPR001841 -
Vian10g00858 242 SUPERFAMILY RING/U-box 173 239 - -
Vian10g00858 242 Pfam Ring finger domain 193 234 IPR001841 -
Vian10g00858 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 239 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00858 Vian-Chr10 8576118 8580466 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00858 159 237 C3H Transcription Factor Family AT1G18760 40.244 1.26e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00858 - - vum:124843592 253.447