Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00841 ATGGTTCAACCAAGTAATGTAACTCCCCTATCATCCACCCCACTTTCTTCCTCTCATGACAACACCTTTGATGATGTTACAGATTCTTCCACTCATCGAAAATCTCCCTCCTCCTCATCATCATCAAAGAGGACACGCGGTAGGCCTATGGGATCCAAGAACAAACCAAAATTAACCCTTGTGATTGACCAAGACAACGAGCATAGTCAAAAACCTATTTTCATTCAAATCCCTAAAAATTCTGATGTGATTGAGGCACTAATCCAATTCGCCTATGATTACCAAATTAGCATCACGGTGCAAAGTGCATCAGGATCTATTATGAATGTCACTCTCCGTGGTAGTGAATCCATAACTTCTACTTTCATTTCTCATGGACCCTTCACATTAGTTTCCCTCATTGGCACTTGCATAAATAACAACTCTTGTACTGTTTCATCATTGTCTAATCTTGACATTGATTGTTTTTTTAACATTTCCTTTTGTTCAAATATAGGTCAAAGCTTTATTGGAGTTGTTGGAGGGAAGGTTATCGGAGGTAATGATGTTGTTGTAGCTGCTACTGTTTCTAATAACTTTTGA 582 0.3849 MVQPSNVTPLSSTPLSSSHDNTFDDVTDSSTHRKSPSSSSSSKRTRGRPMGSKNKPKLTLVIDQDNEHSQKPIFIQIPKNSDVIEALIQFAYDYQISITVQSASGSIMNVTLRGSESITSTFISHGPFTLVSLIGTCINNNSCTVSSLSNLDIDCFFNISFCSNIGQSFIGVVGGKVIGGNDVVVAATVSNNF 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00841 193 MobiDBLite consensus disorder prediction 1 58 - -
Vian10g00841 193 CDD DUF296 71 142 IPR005175 -
Vian10g00841 193 Gene3D - 71 192 - -
Vian10g00841 193 ProSiteProfiles PPC domain profile profile. 67 193 IPR005175 -
Vian10g00841 193 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 25 191 IPR014476 GO:0003680
Vian10g00841 193 MobiDBLite consensus disorder prediction 32 47 - -
Vian10g00841 193 Pfam Plants and Prokaryotes Conserved (PCC) domain 71 188 IPR005175 -
Vian10g00841 193 SUPERFAMILY AF0104/ALDC/Ptd012-like 69 185 - -
Vian10g00841 193 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00841 Vian-Chr10 8406261 8406842 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00841 43 192 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 37.500 8.61e-23 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00841 - - var:108336502 300.056