Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00829 ATGGCCGATTCTCCGCCGAGAAGGAATTCAAGGTCCCCTTCCCCATGGAGGGCTCAGTCAAGATCTAGGTCTAGATCTAGGCCAAGGTCTAGGTCCCGGTCAAGATCATTTGAAAAACAAAGGCCAAGGTCTCGCTCCAGAAGTCGTGGAAGATCAAGATCAAGAAGTAATGACAGGATGGAGACTAAAAATACAGGGAATACACTTTACGTCACTGGCCTATCTTCAAGGGTCACTGAGAGAGACCTGGAGGAGCATTTCTCTAAAGAGGGAAAGGTTGCTTCGTGTTTTCTTGTGGTGGAGCCCCGTACTCGCATTTCTCGAGGTTTCGCTTTTATTACAATGGATAATGTTGAGGATGCAAACCGCTGCATCAAATATCTCAATCAATCAGTTTTAGAGGGTCGCTATATCACTGTTGAGCGGTCACGAAGAAAGCGTGCAAGAACTCCTACACCTGGACACTATCTTGGTCTGAAAAGTACTCGAGACTATGGATATCGCGGTGACCGCGGAAGGTATAGAGGAGGTGGATCTGGCCGTGAAGATTATGCATATCGAGGAGAGCGTGGAAGGTCTCCAAGGCGCTCACCTTATCGAGGTGGTAGAGATTATTCTCCGAGGCATTCACCGCCACCTTATGGCGGAAGAACTAGGAGGGATAGGTCCAGGTCACTTCCATACTCTCCATATGGTAGCCCAGACAGGAGGTATGCTCGTGGATCTAGGTGA 732 0.4877 MADSPPRRNSRSPSPWRAQSRSRSRSRPRSRSRSRSFEKQRPRSRSRSRGRSRSRSNDRMETKNTGNTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDNVEDANRCIKYLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKSTRDYGYRGDRGRYRGGGSGREDYAYRGERGRSPRRSPYRGGRDYSPRHSPPPYGGRTRRDRSRSLPYSPYGSPDRRYARGSR 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00829 243 MobiDBLite consensus disorder prediction 1 21 - -
Vian10g00829 243 SUPERFAMILY RNA-binding domain, RBD 64 177 IPR035979 GO:0003676
Vian10g00829 243 CDD RRM_SF 69 141 - -
Vian10g00829 243 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 53 228 - -
Vian10g00829 243 SMART rrm1_1 68 141 IPR000504 GO:0003723
Vian10g00829 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 145 IPR000504 GO:0003723
Vian10g00829 243 MobiDBLite consensus disorder prediction 143 243 - -
Vian10g00829 243 Gene3D - 7 151 IPR012677 -
Vian10g00829 243 MobiDBLite consensus disorder prediction 1 73 - -
Vian10g00829 243 MobiDBLite consensus disorder prediction 164 203 - -
Vian10g00829 243 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 151 - -
Vian10g00829 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 138 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00829 Vian-Chr10 8264994 8267608 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00829 63 149 Eukaryotic Initiation Factors Gene Family AT1G49760 33.333 2.19e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00829 K12897 - gmx:100527350 343.584