Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00816 ATGGTTTTCCCAGGAGTAAATGAGATGACTCTTAAAGGGTTGGTATCACTTGTGAGCAATCTAATTGGCCTAGCCGAGGGGCAAAGGAACAAGGATGCTCCTTTACCTTCTTGCATCAGCAATTTGAATGAAGATTGTTGGTGTTGTGTGTGCCTGTCAAGGTTAAAGGCAAGAGATGAAATCCGTGTTCTTCCTTGCTCTCACAAATTCCATAAGATTTGTGTAAACAGATGGCTTAAGGGTCACCACAAAACATGCCCACTTTGCCGTTTCTCATTGGGAGCAGAGCAGAAGTCTCATCGTGCTGAAATCTTCTCTGAAGAGATGTTGATATGGTTTTCTTCTTTTCATATAGCTGGTATGTGA 366 0.4235 MVFPGVNEMTLKGLVSLVSNLIGLAEGQRNKDAPLPSCISNLNEDCWCCVCLSRLKARDEIRVLPCSHKFHKICVNRWLKGHHKTCPLCRFSLGAEQKSHRAEIFSEEMLIWFSSFHIAGM 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00816 121 ProSiteProfiles Zinc finger RING-type profile. 48 90 IPR001841 -
Vian10g00816 121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 99 IPR013083 -
Vian10g00816 121 PANTHER TARGET OF ERK KINASE MPK-1 36 97 - -
Vian10g00816 121 Pfam Ring finger domain 48 90 IPR001841 -
Vian10g00816 121 SUPERFAMILY RING/U-box 42 95 - -
Vian10g00816 121 SMART ring_2 48 89 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00816 Vian-Chr10 8108502 8108867 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00816 44 94 C3H Transcription Factor Family AT1G80400 50.980 3.21e-13 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00816 - - gmx:100809233 203.371