Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00788 ATGATTTCTTCTGTGGCCTTTCAACCGTCAATTCCCGCCGTTAACTTCTCCGGTAAAGCCGCGACCTCGCCGTCCTGTAAGGCCAGATCCCGCCCAATAGTCGCCTTCGCCACCGCTACCGCCACTGCAACCGAGGAAGCTCGATCTTCCTGGACGGAGAAACCACGCCCATCGTATCTGAACTCCTCATGCTCTTCTCACTACGATATCCTCGGCATCCCCGCCGGTGCCTCCGTCCAGGAAATCAAGGCCGCGTACCGGCGGTTGGCCAGAGTCTGCCACCCGGACGTGGCGGCGATCGACCGGAAAAATTCCTCCGCGGACGAATTCATGAAGATCCACGCCGCGTACTCCACTCTCTCGGATCCTGACAAACGCGCCAACTACGACCGGAGCCTATTCCGGCGACAACGGCCGCTGTCGACCGCGGCGGTTTTTTCCGGCTACACGCGCCGGAACTGGGAAACGGATCAGTGCTGCTCAAGGTTTCTAGAAGAAGAGGGTTACCGTGCCGTTAGTGCGATTCCACAGTCCGTTGATTAA 543 0.5875 MISSVAFQPSIPAVNFSGKAATSPSCKARSRPIVAFATATATATEEARSSWTEKPRPSYLNSSCSSHYDILGIPAGASVQEIKAAYRRLARVCHPDVAAIDRKNSSADEFMKIHAAYSTLSDPDKRANYDRSLFRRQRPLSTAAVFSGYTRRNWETDQCCSRFLEEEGYRAVSAIPQSVD 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00788 180 PRINTS DnaJ domain signature 68 86 IPR001623 -
Vian10g00788 180 PRINTS DnaJ domain signature 105 125 IPR001623 -
Vian10g00788 180 PRINTS DnaJ domain signature 86 101 IPR001623 -
Vian10g00788 180 ProSiteProfiles dnaJ domain profile. 66 133 IPR001623 -
Vian10g00788 180 CDD DnaJ 67 122 IPR001623 -
Vian10g00788 180 Gene3D DnaJ domain 57 153 IPR036869 -
Vian10g00788 180 SUPERFAMILY Chaperone J-domain 63 136 IPR036869 -
Vian10g00788 180 ProSitePatterns Nt-dnaJ domain signature. 110 129 IPR018253 -
Vian10g00788 180 SMART dnaj_3 65 125 IPR001623 -
Vian10g00788 180 Pfam DnaJ domain 67 130 IPR001623 -
Vian10g00788 180 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 19 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00788 Vian-Chr10 7806563 7807669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00788 67 130 C2H2 Transcription Factor Family AT1G74250 42.647 2.69e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00788 - - vra:106777082 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00788 10 7806563 7807669 Vian10g00788 10 7806563 7807669 ECH