Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00769 ATGATGGAGTCGATGGAGTCATGTGTCCCACCTGGGTTTCGGTTCCACCCAACAGATGAAGAGCTTGTTGGTTACTATCTGAGGAAGAAGGTGGCTTCTCAAAAGATTGACCTTGACGTTATCAGAGAGATCGATCTATATCGTATTGAACCATGGGATCTCCAAGATAGATGCAGGATCGGATATGAAGAGCAGAATGAGTGGTATTTCTTCAGCCACAAAGATAAAAAGTATCCAACAGGGACAAGAACTAATAGAGCTACCATGGCGGGGTTTTGGAAGGCTACAGGAAGAGACAAAGCAGTGTATGACAAGGCAAAACTAATTGGGATGAGAAAAACCCTTGTTTTCTACAAAGGAAGAGCCCCTAATGGACAAAAGTCTGATTGGATCATGCACGAGTATAGACTCGAATCCGACGAGAATGGACCTCCTCAGGAGGAAGGTTGGGTTGTGTGCAGAGCCTTCAAGAAAAAAACCACTGGACAGACAAAGACTATTGAAGGATGGGACTCAAGCTACTTCTTCGAGGAAGGAAGTGGTGTAAGCACTGTGGTTGATCCAATCGATCTCATTTCAAGGCAGTCTCAGAGCTTTTTATCTCAAAATTTCTTGTGTAAGCAAGAGATAGAAGCGGATAACTTGAGTTGCATGCTTCAAGATCCATTTGTACAACTTCCTCAGCTAGAAAGCCCGTCTTTGCCATTAGTGAAGAGGCCAAGCACAGTGTCACTGGTATCAGACAATAACGAAGACGAAGACATGCAAAACAGGTTATCCAACAACAACACAAAGAAAGTCACTGATTGGAGAGCTCTTGACAAGTTTGTAGCCTCTCAACTGAGTCAAGAAGACACGCTTGAAACCAATGGTCTCTCAAGCTTTGAACCCCATGATAGCCACGACATGGCACTGCTGTTACTGCAGAGCAGTAGGGATGAAGGGAACAGGCTAAGCCCTTTTCTAAACACAAGCTCAGACTGTGATATTGGGATATGCGTATTTGAAAAATGA 1014 0.4398 MMESMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQDRCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKAKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLESDENGPPQEEGWVVCRAFKKKTTGQTKTIEGWDSSYFFEEGSGVSTVVDPIDLISRQSQSFLSQNFLCKQEIEADNLSCMLQDPFVQLPQLESPSLPLVKRPSTVSLVSDNNEDEDMQNRLSNNNTKKVTDWRALDKFVASQLSQEDTLETNGLSSFEPHDSHDMALLLLQSSRDEGNRLSPFLNTSSDCDIGICVFEK 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00769 337 Gene3D NAC domain 18 162 IPR036093 GO:0003677|GO:0006355
Vian10g00769 337 ProSiteProfiles NAC domain profile. 9 158 IPR003441 GO:0003677|GO:0006355
Vian10g00769 337 FunFam NAC domain-containing protein 18 162 - -
Vian10g00769 337 Pfam No apical meristem (NAM) protein 10 137 IPR003441 GO:0003677|GO:0006355
Vian10g00769 337 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 255 - -
Vian10g00769 337 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00769 Vian-Chr10 7565525 7567728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00769 2 336 NAC Transcription Factor Family AT2G18060 64.946 9.33e-165 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian10g00769 NAM 5.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00769 - - pvu:PHAVU_002G110900g 676.781