Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00762 ATGCGAACGCTTTGTGATGCTTGTGAGAGTGCGGCGGCTATAGTTTTCTGCGCCGCTGACGAGGCTGCACTTTGTCGTGCTTGCGATGAGAAGGTTCACATGTGCAACAAGCTAGCAAGTAGACATGTGAGAGTTGGTCTTGCAAGTCCAAGTGATGTGCCACGGTGTGACATATGTGAGAATGCACCTGCTTTCTTCTATTGTGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATAGTTCATGTTGGAGGTAAAAGAACGCATGGAAGATATCTTCTGTTCAGGCAAAGAGTTGAGTTTCCAGGAGACAAATCTAGTCATGCTGAAAATCCAGGTTCACAGCCATTGGAACCTGGTGAGAGTAAAAGAGGACAAAATCAACTTCCCAAACTAAAAATGGGAGAGAAGCAGCACAATCATGTGATGCCTCTGCTTCCAACACCAGGATCTGCTGCTGATGGGCATACCAAGATGGAAACAAAAATGATTGATTTGAACATGAAGCCTAATAATAGATTACATGAACAAGCATCAAATAATCAGGTTAGAGTGCATGGGAAGTGGCTTTTGTCTTCCTAA 588 0.4388 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKSSHAENPGSQPLEPGESKRGQNQLPKLKMGEKQHNHVMPLLPTPGSAADGHTKMETKMIDLNMKPNNRLHEQASNNQVRVHGKWLLSS 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00762 195 SMART bboxneu5 51 96 IPR000315 GO:0008270
Vian10g00762 195 SMART bboxneu5 1 47 IPR000315 GO:0008270
Vian10g00762 195 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 169 - -
Vian10g00762 195 CDD Bbox1_BBX-like 56 96 - -
Vian10g00762 195 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Vian10g00762 195 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Vian10g00762 195 MobiDBLite consensus disorder prediction 105 129 - -
Vian10g00762 195 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vian10g00762 195 FunFam B-box zinc finger protein 19 2 92 - -
Vian10g00762 195 CDD Bbox1_BBX-like 4 47 - -
Vian10g00762 195 Gene3D Classic Zinc Finger 2 91 - -
Vian10g00762 195 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Vian10g00762 195 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00762 Vian-Chr10 7507900 7509286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00762 1 184 C2C2-CO-like Transcription Factor Family AT4G38960 61.957 3.23e-73 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vian10g00762 zf-B_box 2.4e-07 No_clan