Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00760 ATGGAGCAGCCGCTTCAACCGCAGCCGGACGCTGCGGCAAACACGGCTCGGGGTTTGGAGGACTCCCGCCTGGTGGGAGCCACTGTCGTGCCTGCTGGCTATGCTGATGTGGCCGAAAAAGATGTTAATAGTAGCGTGCCGAATTCGGAGGTTACGGTCGTCGAAGGCGCCGTTTTGAAACGGAAGCGTGGTCGTCCGGCCAAGGGAGCTCCGAAAGTGGTGCCTATCGTGAGACAAAAGAAGGACGAGGAGGATGTTTGCTTCATTTGCTTCGACGGTGGGAGCCTCGTTCTCTGTGATCGGAGGGGTTGTCCTAAAGCGTATCATCCCACGTGTATTAAGCGAGACGAAGCGTTTTTTCGATCAAAGGCTAAATGGAATTGCGGTTGGCATATATGTAGCGCCTGTCAAAAGGCTTCGCATTATATGTGCTATACTTGCACGTACTCTTTGTGCAAGGGGTGCACAAAAGACGCTGATTTTGTTTGTGTCAGAGAGAATAAAGGTTTATGCGGAATATGCATGAGGACTATAATGCTGATTGAGAACAGCGTCCAAGGAAATAAGGAAATGTGTGAAGTGGATTTCGATGACAAAAGCAGCTGGGAGTATCTTTTCAAGGTTTATTGGATGTATTTGAAAGGGAAGCTATCTTTAACATTTGATGAGCTCCTAAGGGCTAAAAACCCTTGGAAAGCTGTTGCTCCTATGAGTTATAAGGTTCAAAGTCCCCATGAACTTTATCATCTTAGAGATGACAAAGGTTCTGGTTCCGAGAACTCCTGTATTGACATAGAATCAAATAATTTGAAGAACAAAAGACCCAAGAGACAGCCAAAACTTCTTGGCAAGGGTGATTGCCTGGACAGGATGGGTTCAGGTGGTGACAGAGTTATGTCTTTGCCTGAATGCACAAAATGGGCATCGAAGGAGCTACTAGAGTTTGTTTCACATATGAAAAATGGTGATACATCTCTCCTGTCTCAATTTGATGTCCAAACTCTCTTGCTGGAGTATGTGAAGAAAAATAATCTTCGTGATCCTCAACAGATGTCTGAAATTGTTTGTGATTCTAGACTACTAAATTTGTTTGGAAAATCACGAGTCAGCCAAATTGAAATGGTAAAGCTCCTTGAATCCCATTTTCTTTTAAAACACAACGGACCAGCAGAAAATACTTTTGGAGCAGGAATTATTAATGCTGTTGCTAGTGAAGGGGAGGCCATTGACACTCGTAGTAAACAGTTGATGTTAGTTAATGACAAGATATGTAAAACACATAAAAATGCCGATGTTCTAGTTCCGCAAAATAACCCAAATGCATATGCTGCAATAGATGTTCACAATCTTAACTTGATCTACTTGCGGCGATGTCTGATGGAGAATCTAACTGAAGATATTGAAAAGATTCACGAGAAGGTTGTTGGTTCATTTGTGCGGATAAGAATCTCGAGCAGTGATCAAAAACAAGATATGTATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCTGAATCATACAAAACTGGGACAAAAACAACTGATTTTAAGCTTGAAATTTTAAACTTAAACAGGAAGGAGGTCATACACATTGCTGAAATTTCTAATCAGGAGTTCTCTGAGGATGAATGCAAGCGGTTGCGTCAGAGTATAAAATATGGGCTCTCAAAGAGATTGACTGTGGGAGAGATTCTAAACAAAGCATTAACACTTCAAGCAATTAGAGTTAATGATTTGCTGGAAGCTGAGATTTTGCGGCTTAATCATCTTCGTGATAGAGCAAGTGAAAAGGGGCATAGAAAAGAGGTTAAAGAATATGAGGAGAAGTTGCAGCTACTGAACTCTCCAGAGGAGCGGCAACGCAGGCTGCAAGAAATTCCAGATGTACACTCTGACCCCAATTTAGATTCAATGTTTGAGTCTGATGAAGATGATGGAGAGTCAGATGAAAGGAAGCAAGATACCAATATATTTTCAAAATATCTTGGGTTTGATAGAAGAGAGAGGGGCTCTTTTTTTCCAAGAATTTCGAACAATGTCTTCAATGATGCGGGAGGCAAAACACAAGACTTGCCTGTTACCCGAGAACATGTTGGGAGTATATGTACAGTAAAGAACTGTGACACAGCTATCGAGGATAGCACTAATACGGTTGTGAAATCAGAAGTGTCTAGTGTTGCAGTGGACATTTCACCATCACTTATCCCAGTGGAGATACAGCAGCCACTTAATGAATTTTTGAATGATAGATCATGGAATTATCAAGATCCAACTGGGAAGGTTCAAGGGCCTTTTTCTATGTTGCAGCTGTACAAATGGAATGTAAGTGGAGGTTTCCCTCCAGATCTCAAAATATGGAGGATAGGTGAGAAACAGGATAACTCTATACTGTTAACGGATGCACTAAGTGGGAAGTGTTCCAAAAATGTGTCATTGCCATTCAACAACCCATTGCTCTCTCTAGGGGTCAGTACATTGGATAATAAACATAATGTTCAGGATGCTGGGAAGAATGTAGTGAAGAATGGAATTTCTGCCGATGGGCAAATTATTGAACAGATCAAGGAAAAAATAGTGGATGATACCTCTACCCAGTCTGATGGTAAAGCTGAGCCTGTCAGGAGCAATGGATGGCTTGGGCCGCTGCATTTATACCCTTCACCATTGACAACTGCCATTACTGAGAAAATGAATGAAACTTCTGATAAATTAAGGAAAGATCATGGGATTGTGCGAAACTCTCAAGATAATGGAAATAATGGCTCAAACAGAACAGTTGATGGGCAGAGTAATAGTGGGCAAAGTTATCAGAAGCCATCAGATAGTGAAGAGAATGCAGGGCAATCTTCTGGACAGACCTGGAGACACCCTAATGTTAATATTAATAGCTCTTCGGATTGCCTGGTTGCCACGTCAGCTCATGTTTCGGGCAAAAAAACATCACCTCATAAGCTGGGATTTGATTTGCATAATTCTCCTTCCCCTCCAGCATGTAATACATCATCTGGACAGACCTGGAGACCCCCTCATGTTAATAGCCCTTCCAATTGCTTGGTTACCACGTCAGCTCATGCCTCTGATACAAAAACATCACCACATAAGCTGGGATTTGATTTGCATAATCCTCCCTCCCCTCCTGCATGTAATACATCATCTGGACAGACCTGGAGTCACCCTACTGTAAATAGTTCTTCTGATTGCTTGGTTAACACACCAGCTCATGTTTCTGGTACAAAAACATCACCACATAAGCTGGGCTTTGATTTGCATAATCCTCCTTCCCCTCCAGCTTGTAATACATCTTCTGGACAGACTTGGAGACACTTTGATATAAATATTTCTACCAATTGCTTAGTTACCTCATCAAATCATGTTTCTGGTGTAAAAACATCACCGCATAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCAACTTGTAATACATCAACATGGCAGGCAATCATTGGCGAGCCCAATGATTTTGATGAATCAGTTTCAGATCTGTTGGCAGAAGTGGAAGCAATGGAGTCACTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAATGTGGCGATGATTTGACTGAAGGTTCTAAAAATGATTGTCTCAGCTTTGTTGCAGACCTTGGCCCAATGCTTGATGCAGGTAAAGGTGATGCACTGAGCTCCACTGGAGATTTAAACTTACCATCTCAACCGACAGCAGCAGAGGAACCATTACGGCAAGCAGATGTACATCACCATCATCAAAGAATTTCTGATGAGCATTCTTCAAGAAGTTCTAAAGTTGAGGTGGGTACAAAAAACACAAGTGTCTCGGGTAATCAATGGGATTCAGGCTCAGAAAATTCACCCGTTGTTCCATCTCCTGCAACCTTGGGCCTGGCTATAGACACCACTTGGAGACTTGGGCTAGATAGTACACCTTTGGGGTGGAGTGGAATAGATCAAGGAAATACAAATGTGGGTTGGGGAGTAGGACAAACAGCAGTGCAGGAAACCAGGAGCTCAAATTCATACACTTCTGTAGTAACTCCAGGTTTTGGGGATAACCAAACAAGATATGGCAGTGATCGTTTTTCTGTGCCTAGAGATCGGGGTTCTCAAGGTCATGCTAGGGAATCAGGTTTTGGTAGAAGCAGAATTGCATTTAACAGGCAACCGTCGTATGGTGTTGGGAATGGAGGCTCATATAGGCCTCTGCCCAAAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTACTGTAAGAAGGGGGCATCCTGTGATTACTGGCACCCATGA 4293 0.4272 MEQPLQPQPDAAANTARGLEDSRLVGATVVPAGYADVAEKDVNSSVPNSEVTVVEGAVLKRKRGRPAKGAPKVVPIVRQKKDEEDVCFICFDGGSLVLCDRRGCPKAYHPTCIKRDEAFFRSKAKWNCGWHICSACQKASHYMCYTCTYSLCKGCTKDADFVCVRENKGLCGICMRTIMLIENSVQGNKEMCEVDFDDKSSWEYLFKVYWMYLKGKLSLTFDELLRAKNPWKAVAPMSYKVQSPHELYHLRDDKGSGSENSCIDIESNNLKNKRPKRQPKLLGKGDCLDRMGSGGDRVMSLPECTKWASKELLEFVSHMKNGDTSLLSQFDVQTLLLEYVKKNNLRDPQQMSEIVCDSRLLNLFGKSRVSQIEMVKLLESHFLLKHNGPAENTFGAGIINAVASEGEAIDTRSKQLMLVNDKICKTHKNADVLVPQNNPNAYAAIDVHNLNLIYLRRCLMENLTEDIEKIHEKVVGSFVRIRISSSDQKQDMYRLVQVVGTSKVAESYKTGTKTTDFKLEILNLNRKEVIHIAEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILNKALTLQAIRVNDLLEAEILRLNHLRDRASEKGHRKEVKEYEEKLQLLNSPEERQRRLQEIPDVHSDPNLDSMFESDEDDGESDERKQDTNIFSKYLGFDRRERGSFFPRISNNVFNDAGGKTQDLPVTREHVGSICTVKNCDTAIEDSTNTVVKSEVSSVAVDISPSLIPVEIQQPLNEFLNDRSWNYQDPTGKVQGPFSMLQLYKWNVSGGFPPDLKIWRIGEKQDNSILLTDALSGKCSKNVSLPFNNPLLSLGVSTLDNKHNVQDAGKNVVKNGISADGQIIEQIKEKIVDDTSTQSDGKAEPVRSNGWLGPLHLYPSPLTTAITEKMNETSDKLRKDHGIVRNSQDNGNNGSNRTVDGQSNSGQSYQKPSDSEENAGQSSGQTWRHPNVNINSSSDCLVATSAHVSGKKTSPHKLGFDLHNSPSPPACNTSSGQTWRPPHVNSPSNCLVTTSAHASDTKTSPHKLGFDLHNPPSPPACNTSSGQTWSHPTVNSSSDCLVNTPAHVSGTKTSPHKLGFDLHNPPSPPACNTSSGQTWRHFDINISTNCLVTSSNHVSGVKTSPHKLGFDLHNPPSPPTCNTSTWQAIIGEPNDFDESVSDLLAEVEAMESLGGLESPTSIMKCGDDLTEGSKNDCLSFVADLGPMLDAGKGDALSSTGDLNLPSQPTAAEEPLRQADVHHHHQRISDEHSSRSSKVEVGTKNTSVSGNQWDSGSENSPVVPSPATLGLAIDTTWRLGLDSTPLGWSGIDQGNTNVGWGVGQTAVQETRSSNSYTSVVTPGFGDNQTRYGSDRFSVPRDRGSQGHARESGFGRSRIAFNRQPSYGVGNGGSYRPLPKGQRVCKFYESGYCKKGASCDYWHP 1430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00760 1430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 175 IPR013083 -
Vian10g00760 1430 ProSiteProfiles Zinc finger PHD-type profile. 84 150 IPR019787 -
Vian10g00760 1430 SUPERFAMILY SWIB/MDM2 domain 306 383 IPR036885 -
Vian10g00760 1430 Pfam SWIB/MDM2 domain 309 382 IPR003121 -
Vian10g00760 1430 CDD PHD5_NSD 86 131 - -
Vian10g00760 1430 SMART gyf_5 751 806 IPR003169 GO:0005515
Vian10g00760 1430 CDD GYF 750 805 IPR003169 GO:0005515
Vian10g00760 1430 MobiDBLite consensus disorder prediction 1243 1265 - -
Vian10g00760 1430 Gene3D SWIB/MDM2 domain 298 389 IPR036885 -
Vian10g00760 1430 ProSiteProfiles GYF domain profile. 750 804 IPR003169 GO:0005515
Vian10g00760 1430 SUPERFAMILY CCCH zinc finger 1405 1429 IPR036855 GO:0046872
Vian10g00760 1430 MobiDBLite consensus disorder prediction 914 961 - -
Vian10g00760 1430 MobiDBLite consensus disorder prediction 1243 1290 - -
Vian10g00760 1430 MobiDBLite consensus disorder prediction 1266 1290 - -
Vian10g00760 1430 MobiDBLite consensus disorder prediction 859 880 - -
Vian10g00760 1430 Pfam GYF domain 753 794 IPR003169 GO:0005515
Vian10g00760 1430 ProSiteProfiles Zinc finger C3H1-type profile. 1405 1430 IPR000571 GO:0046872
Vian10g00760 1430 MobiDBLite consensus disorder prediction 597 653 - -
Vian10g00760 1430 FunFam Zinc finger CCCH domain-containing protein 19 76 176 - -
Vian10g00760 1430 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 35 1430 - -
Vian10g00760 1430 Gene3D - 752 808 IPR035445 -
Vian10g00760 1430 SUPERFAMILY FYVE/PHD zinc finger 79 131 IPR011011 -
Vian10g00760 1430 Gene3D - 445 574 IPR036128 GO:0003677
Vian10g00760 1430 ProSiteProfiles SWIB/MDM2 domain profile. 301 384 IPR003121 -
Vian10g00760 1430 ProSitePatterns Zinc finger PHD-type signature. 87 147 IPR019786 -
Vian10g00760 1430 SMART swib_2 304 387 IPR019835 -
Vian10g00760 1430 FunFam Zinc finger CCCH domain-containing protein 19 445 574 - -
Vian10g00760 1430 SUPERFAMILY Plus3-like 445 573 IPR036128 GO:0003677
Vian10g00760 1430 Pfam Plus-3 domain 449 552 IPR004343 GO:0003677
Vian10g00760 1430 Coils Coil 578 598 - -
Vian10g00760 1430 SMART PHD_3 86 132 IPR001965 -
Vian10g00760 1430 MobiDBLite consensus disorder prediction 911 961 - -
Vian10g00760 1430 MobiDBLite consensus disorder prediction 597 630 - -
Vian10g00760 1430 CDD SWIB-MDM2_like 307 382 - -
Vian10g00760 1430 SMART rtf1 444 554 IPR004343 GO:0003677
Vian10g00760 1430 SUPERFAMILY GYF domain 743 803 IPR035445 -
Vian10g00760 1430 ProSiteProfiles Plus3 domain profile. 444 577 IPR004343 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00760 Vian-Chr10 7477461 7483764 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00760 84 167 PHD Transcription Factor Family AT5G36670 32.558 2.14e-06 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vian10g00760 Plus-3 5.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00760 - - vun:114173625 2771.88