Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00756 ATGAAAGTTAATGTTCTGCCCGTTGGATTAGTATCATCAGTGGTCTGTGACAGAGGGCCTAACGCGCATGTAGAAAAGGGCGAAGTTGTGCGCGACGTGGGCGGAGTGGAGATGATACTCTCGAACACAGCGATGAGCGGCGAGGACTGGTGGCGGACAGTCACCTTGTGGCCGCCGTGGCAGTGGGGGGAAACACGGGTGATGAGATCAGAGAGTATGCGTCGTTGGATATCCAACGGCTGTTCTCAGCTTCGGTGGGATCGCGTTGAAGGTTGGTCCGGTGCTATTGGGCCATTTGGGAGCGAAGACACTCGCAATACGCTGTTCAACATCATGTCCGACTCTCCAGAACTGATTGTAGAGGAGCGGTGTCCTAGATTGATCTGTTTGGGAGTGTCTGCGAGAAGCGAAGCTGGCGACCACACTGACTTGGAGGTACGACTCTCTAAGAAAGGGTTAATCATAACAACTGATTCTTGGTTTATCAAGATAGTTTCTACTCTATTTCTATGCTCTACCTCTTTTGATGATGAATTTCTGGATTATTTCCTTCTATCCGTTCACCAGGGAAAAGTTGAGTATGTCTCATTCATTTTGGACTTACAATATGCTTTGAGGTCCCTTTGTCAAGCAAATCTCCACAGTTCAGCAAAATTGTTATATGATTCCATGAGGTCTGATGGGCCATTGCCTGATTATTCGCTTTTGGGATTCTTGGTTTCCTCTTTTGCACTGGCTGACAGGTTTGATGTTTCAAAGGAATTACTTGCTGAAGCTCTGTGCAAGAGCAATAGACTGCAAGAAGCACATAATCTTTTGAGACTATTGAAGCAGAGTGACATTGATCCACAATCTTTTGTCTACAATCCTGTCATTGGTGGATATTGCAAATCTGGGAACATTGATGAGACTAATGTAATTGTGGCAGAGATGGAAGAGAAGTGCAAGCCTGATAAGTTGACATTTACCATTCTTATTATTGGACATTGTATGAAAGGAAGAACACTTTAA 1011 0.45 MKVNVLPVGLVSSVVCDRGPNAHVEKGEVVRDVGGVEMILSNTAMSGEDWWRTVTLWPPWQWGETRVMRSESMRRWISNGCSQLRWDRVEGWSGAIGPFGSEDTRNTLFNIMSDSPELIVEERCPRLICLGVSARSEAGDHTDLEVRLSKKGLIITTDSWFIKIVSTLFLCSTSFDDEFLDYFLLSVHQGKVEYVSFILDLQYALRSLCQANLHSSAKLLYDSMRSDGPLPDYSLLGFLVSSFALADRFDVSKELLAEALCKSNRLQEAHNLLRLLKQSDIDPQSFVYNPVIGGYCKSGNIDETNVIVAEMEEKCKPDKLTFTILIIGHCMKGRTL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00756 336 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 205 334 - -
Vian10g00756 336 Gene3D Tetratricopeptide repeat domain 199 336 IPR011990 GO:0005515
Vian10g00756 336 Pfam PPR repeat 205 228 IPR002885 -
Vian10g00756 336 Pfam PPR repeat 258 280 IPR002885 -
Vian10g00756 336 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 314 IPR002885 -
Vian10g00756 336 Pfam PPR repeat family 283 330 IPR002885 -
Vian10g00756 336 NCBIfam pentatricopeptide repeat 287 317 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00756 Vian-Chr10 7402769 7410147 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00756 14 130 Subtilisin-like Serine Gene Family AT2G05920 34.615 3.18e-12 65.9